RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 A0A1W2PPV9 198 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 SH2D1BO14796 132 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 NKX2-2O95096 273 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 CBLN1P23435 193 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 CKS1BP61024 79 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 PSG9Q00887 426 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 PHYHD1Q5SRE7 291 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 STXBP6Q8NFX7 210 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 NTF3P20783 257 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 PLP1P60201 277 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 RPL27P61353 136 aaKnown RBP9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 BHLHA15Q7RTS1 189 aaPredicted RBP9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 TMEM144Q7Z5S9 345 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 PIP4P1Q86T03 277 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 ATOH7Q8N100 152 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 MSI2Q96DH6 328 aaKnown RBP9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 J3QR89 54 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 ADAM20O43506 726 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 RAB9AP51151 201 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 LINC00696Q6ZRV3 163 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 CHRDL1Q9BU40 450 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 NUP210Q8TEM1 1887 aaPredicted RBP9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 ACACBO00763 2458 aa9.32□□□□□ -0.92
CLSTN3-207ENST00000537408 COL4A3Q01955 1670 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 C3orf85A0A1B0GTC6 90 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 NUDT3O95989 172 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 CLRN1P58418 232 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 SCARF2Q96GP6 870 aaPredicted RBP9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 RBM24Q9BX46 236 aaKnown RBP9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 PBOV1Q9GZY1 135 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 CD5LO43866 347 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 CHST1O43916 411 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 REG1AP05451 166 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 ASAH2BP0C7U1 165 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 LHX2P50458 406 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 C9orf135Q5VTT2 229 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 DEFB125Q8N687 156 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 WFDC12Q8WWY7 111 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 ZNF71Q9NQZ8 489 aaPredicted RBP9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 PPP1R3CQ9UQK1 317 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 IGHV5-51A0A0C4DH38 117 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 A0A1W2PQM1 296 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 ZFAND5O76080 213 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 C3orf79P0CE67 100 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 PPP1CAP62136 330 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 ZNF141Q15928 474 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 MPV17L2Q567V2 206 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 C5orf17Q8NAS9 161 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 TMEM38BQ9NVV0 291 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 PLAURQ03405 335 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 SMAGPQ0VAQ4 97 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 COX19Q49B96 90 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 FHL5Q5TD97 284 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 ZIC4Q8N9L1 334 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 OR5A2Q8NGI9 324 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 OR10G8Q8NGN5 311 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 OR2AE1Q8NHA4 323 aa9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 COA3Q9Y2R0 106 aaPredicted RBP9.31□□□□□ -0.92
CLSTN3-207ENST00000537408 DENND4CQ5VZ89 1909 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 IGKV1D-42A0A075B6H8 117 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 SNURFLB1AK76 121 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 MT-ND6P03923 174 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 CCNOP22674 350 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 OPRM1P35372 400 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 NPBWR2P48146 333 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 OR10J3Q5JRS4 329 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 CARD17Q5XLA6 110 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 LINC00346Q8IVM7 164 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 RAB40CQ96S21 281 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 ZNF324O75467 553 aaPredicted RBP9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 CXorf66Q5JRM2 361 aaPredicted RBP9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 SFTPA2Q8IWL1 248 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 CA13Q8N1Q1 262 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 CT55Q8WUE5 264 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 SFRP2Q96HF1 295 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 CTXND1A0A1B0GTU2 59 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 A0A1W2PP11 408 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 PDE6DO43924 150 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 AZU1P20160 251 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 RAB31Q13636 194 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 FAM53BQ14153 422 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 ACKR1Q16570 336 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 SPACA3Q8IXA5 215 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 CHODLQ9H9P2 273 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 DECR2Q9NUI1 292 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 MCTS1Q9ULC4 181 aaKnown RBP9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 ZNF318Q5VUA4 2279 aa9.3□□□□□ -0.92
CLSTN3-207ENST00000537408 TRAV17A0A0B4J275 112 aa9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 CYC1P08574 325 aa9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 IER3P46695 156 aa9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 TLE1Q04724 770 aa9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 OR10V1Q8NGI7 309 aa9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 HOXB13Q92826 284 aaPredicted RBP9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 OR2A5Q96R48 311 aa9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 DERL1Q9BUN8 251 aa9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 SPTBP11277 2137 aa9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 IGHV3-20A0A0C4DH32 117 aa9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 H3BML4 177 aa9.29□□□□□ -0.92
CLSTN3-207ENST00000537408 NXPH3O95157 252 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms