RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 TMEM176BQ3YBM2 270 aaPredicted RBP2.5□□□□□ -2.01
PRKDC-208ENST00000536710 SLC36A2Q495M3 483 aa2.5□□□□□ -2.01
PRKDC-208ENST00000536710 Q8N402 240 aa2.5□□□□□ -2.01
PRKDC-208ENST00000536710 UPK3BQ9BT76 320 aa2.5□□□□□ -2.01
PRKDC-208ENST00000536710 TXNL4BQ9NX01 149 aaKnown RBP2.5□□□□□ -2.01
PRKDC-208ENST00000536710 EMC3Q9P0I2 261 aa2.5□□□□□ -2.01
PRKDC-208ENST00000536710 MINOS1-NBL1R4GNA1 71 aa2.5□□□□□ -2.01
PRKDC-208ENST00000536710 BICRAQ9NZM4 1560 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 C5orf49A4QMS7 147 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 M0QZ92 97 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 UBE2L6O14933 153 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 TMEM33P57088 247 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 EBPQ15125 230 aaKnown RBP2.49□□□□□ -2.01
PRKDC-208ENST00000536710 SLC51BQ86UW2 128 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 ZNF567Q8N184 647 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 TMEM156Q8N614 296 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 TMEM109Q9BVC6 243 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 MAP1LC3AQ9H492 121 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 SLC2A9Q9NRM0 540 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 POLR3HQ9Y535 204 aaPredicted RBP2.49□□□□□ -2.01
PRKDC-208ENST00000536710 PCYT1BQ9Y5K3 369 aaPredicted RBP2.49□□□□□ -2.01
PRKDC-208ENST00000536710 MYO5BQ9ULV0 1848 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 COL18A1P39060 1754 aa2.49□□□□□ -2.01
PRKDC-208ENST00000536710 A0A0J9YX75 114 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 C19orf71A6NCJ1 209 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 H0Y980 276 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 M0R381 172 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 SLC16A4O15374 487 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 TRAPPC3O43617 180 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 ZNF7P17097 686 aaPredicted RBP2.48□□□□□ -2.01
PRKDC-208ENST00000536710 NPPCP23582 126 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 CXCR4P61073 352 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 HLA-DRB3P79483 266 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 FOXF1Q12946 379 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 JOSD1Q15040 202 aaPredicted RBP2.48□□□□□ -2.01
PRKDC-208ENST00000536710 CDKL4Q5MAI5 379 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 TNFAIP8L2Q6P589 184 aaPredicted RBP2.48□□□□□ -2.01
PRKDC-208ENST00000536710 AMTNQ6UX39 209 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 C1orf174Q8IYL3 243 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 OR2D3Q8NGH3 330 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 OR4C16Q8NGL9 310 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 FNDC9Q8TBE3 224 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 C16orf78Q8WTQ4 265 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 EEF1AKMT1Q8WVE0 214 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 MBOAT7Q96N66 472 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 C11orf1Q9H5F2 150 aa2.48□□□□□ -2.01
PRKDC-208ENST00000536710 NOSIPQ9Y314 301 aaKnown RBP2.48□□□□□ -2.01
PRKDC-208ENST00000536710 YLPM1P49750 1951 aaKnown RBP2.47□□□□□ -2.01
PRKDC-208ENST00000536710 GRIFINA4D1Z8 144 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 UBFD1O14562 309 aaKnown RBP2.47□□□□□ -2.01
PRKDC-208ENST00000536710 CRHBPP24387 322 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 SERPINB10P48595 397 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 SNAP25P60880 206 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 BTN3A2P78410 334 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 ZNF181Q2M3W8 571 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 N4BP2L1Q5TBK1 243 aaPredicted RBP2.47□□□□□ -2.01
PRKDC-208ENST00000536710 OGFRL1Q5TC84 451 aaPredicted RBP2.47□□□□□ -2.01
PRKDC-208ENST00000536710 COMMD7Q86VX2 200 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 LRRC34Q8IZ02 419 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 PIGXQ8TBF5 258 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 PHOSPHO2Q8TCD6 241 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 MS4A6EQ96DS6 147 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 ARL5BQ96KC2 179 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 NKX6-2Q9C056 277 aaPredicted RBP2.47□□□□□ -2.01
PRKDC-208ENST00000536710 C16orf95Q9H693 158 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 DCAF1Q9Y4B6 1507 aa2.47□□□□□ -2.01
PRKDC-208ENST00000536710 LRRN3E7EW58 273 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 HLA-DQB2P05538 268 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 CRYBB3P26998 211 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 BLVRBP30043 206 aaPredicted RBP2.46□□□□□ -2.02
PRKDC-208ENST00000536710 RASSF6Q6ZTQ3 369 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 C12orf43Q96C57 262 aaKnown RBP2.46□□□□□ -2.02
PRKDC-208ENST00000536710 ANKRD36BP1Q96IX9 119 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 STACQ99469 402 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 HES4Q9HCC6 221 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 DKKL1Q9UK85 242 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 POLR1DQ9Y2S0 133 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 ZNF337Q9Y3M9 751 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 MMACHCQ9Y4U1 282 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 OBSCNQ5VST9 7968 aa2.46□□□□□ -2.02
PRKDC-208ENST00000536710 OR11H12B2RN74 326 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 SLC17A3O00476 420 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 MT-CO2P00403 227 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 IL3P08700 152 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 KRT7P08729 469 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 C8orf88P0DMB2 117 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 RPL12P30050 165 aaKnown RBP2.45□□□□□ -2.02
PRKDC-208ENST00000536710 FUSP35637 526 aaKnown RBP eCLIP2.45□□□□□ -2.02
PRKDC-208ENST00000536710 CTBP2P56545 445 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 RPS24P62847 133 aaKnown RBP2.45□□□□□ -2.02
PRKDC-208ENST00000536710 OR11H2Q8NH07 326 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 TESCQ96BS2 214 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 CPNE2Q96FN4 548 aaPredicted RBP2.45□□□□□ -2.02
PRKDC-208ENST00000536710 OR52B2Q96RD2 323 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 BABAM2Q9NXR7 383 aa2.45□□□□□ -2.02
PRKDC-208ENST00000536710 ZCCHC6Q5VYS8 1495 aaKnown RBP2.45□□□□□ -2.02
PRKDC-208ENST00000536710 TMED7-TICAM2A0A0A6YYA0 188 aa2.44□□□□□ -2.02
PRKDC-208ENST00000536710 ODF3BA8MYP8 253 aa2.44□□□□□ -2.02
PRKDC-208ENST00000536710 CXCR6O00574 342 aa2.44□□□□□ -2.02
PRKDC-208ENST00000536710 HLA-DRAP01903 254 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms