RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 IDO2Q6ZQW0 420 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 ABHD12Q8N2K0 398 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 ZBTB34Q8NCN2 500 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 OR11H6Q8NGC7 330 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 OR52L2PQ8NGH6 319 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 OR13D1Q8NGV5 346 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 OR9G1Q8NH87 305 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 ZFAND1Q8TCF1 268 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 CREB3L1Q96BA8 519 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 MSI2Q96DH6 328 aaKnown RBP6.03□□□□□ -1.44
CD44-228ENST00000528455 ZNF486Q96H40 463 aaPredicted RBP6.03□□□□□ -1.44
CD44-228ENST00000528455 AKR1E2Q96JD6 320 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 ZNF2Q9BSG1 426 aaPredicted RBP6.03□□□□□ -1.44
CD44-228ENST00000528455 SIRPDQ9H106 197 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 DPAGT1Q9H3H5 408 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 ONECUT1Q9UBC0 465 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 GNG12Q9UBI6 72 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 ZNF69Q9UC07 566 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 GPR132Q9UNW8 380 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 PSG11Q9UQ72 335 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 SESN1Q9Y6P5 492 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 MEX3AA1L020 520 aaKnown RBP6.02□□□□□ -1.45
CD44-228ENST00000528455 FAM172BPA6NC97 362 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 OR5H14A6NHG9 310 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 TOR1AO14656 332 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 CD5LO43866 347 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 PTTG1O95997 202 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 PPYP01298 95 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 IGLV1-47P01700 117 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 AADACP22760 399 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 NFYAP23511 347 aaPredicted RBP6.02□□□□□ -1.45
CD44-228ENST00000528455 NFYBP25208 207 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 GNRHRP30968 328 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 UBE2E1P51965 193 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 RAG2P55895 527 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 BPIFB3P59826 476 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 KRTAP1-1Q07627 177 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 RBMS2Q15434 407 aaKnown RBP6.02□□□□□ -1.45
CD44-228ENST00000528455 SCGB2B2Q4G0G5 96 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 CT45A1Q5HYN5 189 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 NCR3LG1Q68D85 454 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 FAHD2BQ6P2I3 314 aaPredicted RBP6.02□□□□□ -1.45
CD44-228ENST00000528455 SLC25A48Q6ZT89 311 aaKnown RBP6.02□□□□□ -1.45
CD44-228ENST00000528455 NRARPQ7Z6K4 114 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 GLCCI1Q86VQ1 547 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 ZDHHC22Q8N966 263 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 MINDY2Q8NBR6 621 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 ZNF439Q8NDP4 499 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 BEND2Q8NDZ0 799 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 OR2AK2Q8NG84 335 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 OR10V1Q8NGI7 309 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 OR13C8Q8NGS7 320 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 CT45A3Q8NHU0 189 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 MOB3AQ96BX8 217 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 FAHD2AQ96GK7 314 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 MARVELD1Q9BSK0 173 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 YAE1D1Q9NRH1 226 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 HIF1ANQ9NWT6 349 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 PIPOXQ9P0Z9 390 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 OR1A1Q9P1Q5 309 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 NUBP2Q9Y5Y2 271 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 AUP1Q9Y679 476 aa6.02□□□□□ -1.45
CD44-228ENST00000528455 IGHV2-26A0A0B4J1V2 119 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 IGHV3-43A0A0B4J1X8 118 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 RAB29O14966 203 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 CRLF1O75462 422 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 NDUFB6O95139 128 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 OR8U9P0C7N5 309 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 IGHV3-43DP0DP04 118 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 BTCP35070 178 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 PPP1CCP36873 323 aaKnown RBP6.01□□□□□ -1.45
CD44-228ENST00000528455 CCR6P51684 374 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 HERV-K104P61576 105 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 OXA1LQ15070 435 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 CT83Q5H943 113 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 PRAMEF5Q5TYX0 476 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 FAAP20Q6NZ36 180 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 PLET1Q6UQ28 207 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 CCBE1Q6UXH8 406 aaPredicted RBP6.01□□□□□ -1.45
CD44-228ENST00000528455 VMO1Q7Z5L0 202 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 CMTM1Q8IZ96 169 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 SLC38A6Q8IZM9 456 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 TEX29Q8N6K0 151 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.01□□□□□ -1.45
CD44-228ENST00000528455 OR8U1Q8NH10 309 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 UBALD1Q8TB05 177 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 MARCH1Q8TCQ1 289 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 CHPT1Q8WUD6 406 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 MRGPRFQ96AM1 343 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 UPRTQ96BW1 309 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 TBX15Q96SF7 602 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 CLEC7AQ9BXN2 247 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 SLC5A7Q9GZV3 580 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 LPAR2Q9HBW0 351 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 ZNF221Q9UK13 617 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 KCNIP3Q9Y2W7 256 aa6.01□□□□□ -1.45
CD44-228ENST00000528455 RBM7Q9Y580 266 aaKnown RBP6.01□□□□□ -1.45
CD44-228ENST00000528455 SONP18583 2426 aaKnown RBP6.01□□□□□ -1.45
CD44-228ENST00000528455 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6□□□□□ -1.45
CD44-228ENST00000528455 CENPVL3A0A0U1RRI6 287 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms