RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 SMIM20Q8N5G0 67 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 C1orf162Q8NEQ5 155 aaPredicted RBP4.94□□□□□ -1.62
CD44-225ENST00000527326 NUP43Q8NFH3 380 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 OR51T1Q8NGJ9 327 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 OR4A5Q8NH83 315 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 TMEM171Q8WVE6 324 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 GLMPQ8WWB7 406 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 RTN4IP1Q8WWV3 396 aaPredicted RBP4.94□□□□□ -1.62
CD44-225ENST00000527326 LHX4Q969G2 390 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 MSI2Q96DH6 328 aaKnown RBP4.94□□□□□ -1.62
CD44-225ENST00000527326 C5orf30Q96GV9 206 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 LINC00615Q96LM1 132 aaPredicted RBP4.94□□□□□ -1.62
CD44-225ENST00000527326 GPER1Q99527 375 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 ANAPC13Q9BS18 74 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 TPPP3Q9BW30 176 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 SFXN3Q9BWM7 321 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 RBM24Q9BX46 236 aaKnown RBP4.94□□□□□ -1.62
CD44-225ENST00000527326 QTRT1Q9BXR0 403 aaKnown RBP4.94□□□□□ -1.62
CD44-225ENST00000527326 ULBP3Q9BZM4 244 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 CDIP1Q9H305 208 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 FNDC4Q9H6D8 234 aaPredicted RBP4.94□□□□□ -1.62
CD44-225ENST00000527326 PELI2Q9HAT8 420 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 GNB4Q9HAV0 340 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 ZNF286AQ9HBT8 521 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 SIGLEC8Q9NYZ4 499 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 PLA2G3Q9NZ20 509 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 IL36BQ9NZH7 164 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 TIMM9Q9Y5J7 89 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 SPCS1Q9Y6A9 102 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 KCNE3Q9Y6H6 103 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 BRCA2P51587 3418 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 TRIOBPQ9H2D6 2365 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 MYO16Q9Y6X6 1858 aa4.94□□□□□ -1.62
CD44-225ENST00000527326 KIAA0100Q14667 2235 aaKnown RBP4.93□□□□□ -1.62
CD44-225ENST00000527326 A0A0D9SEW6 157 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 A0A1B0GTH9 108 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 A0A1W2PPM0 123 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 HELTA6NFD8 242 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 CD300LBA8K4G0 201 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 B9A039 149 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 F8W1H4 67 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 TNFRSF13BO14836 293 aaPredicted RBP4.93□□□□□ -1.62
CD44-225ENST00000527326 ADAM20O43506 726 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 LDB3O75112 727 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 CLDN7O95471 211 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 HLA-DQA2P01906 255 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 ISG15P05161 165 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 SERPINE2P07093 398 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 CELA3BP08861 270 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 HIST1H1EP10412 219 aaKnown RBP4.93□□□□□ -1.62
CD44-225ENST00000527326 NPPBP16860 134 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 CBLN1P23435 193 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 HTR1DP28221 377 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 FUT6P51993 359 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 SNU13P55769 128 aaKnown RBP4.93□□□□□ -1.62
CD44-225ENST00000527326 RHOAP61586 193 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 ROM1Q03395 351 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 ZNF90Q03938 601 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 ARFRP1Q13795 201 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 LRRC75BQ2VPJ9 315 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 KCTD18Q6PI47 426 aaPredicted RBP4.93□□□□□ -1.62
CD44-225ENST00000527326 TCF23Q7RTU1 214 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 UEVLDQ8IX04 471 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 OR10G8Q8NGN5 311 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 OR4F5Q8NH21 305 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 SCAMP5Q8TAC9 235 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 KCNG3Q8TAE7 436 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 OR51E1Q8TCB6 317 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 ZNRF4Q8WWF5 429 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 NEUROG1Q92886 237 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 LSM10Q969L4 123 aaKnown RBP4.93□□□□□ -1.62
CD44-225ENST00000527326 C10orf35Q96D05 121 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 RNF183Q96D59 192 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 DNAJA3Q96EY1 480 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 TXNDC17Q9BRA2 123 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 CLEC7AQ9BXN2 247 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 TMEM191AQ9H0A3 160 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 ELOVL3Q9HB03 270 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 PNRC2Q9NPJ4 139 aaKnown RBP4.93□□□□□ -1.62
CD44-225ENST00000527326 SCRT2Q9NQ03 307 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 RPRMQ9NS64 109 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 SLC39A9Q9NUM3 307 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 AP5S1Q9NUS5 200 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 RALYQ9UKM9 306 aaKnown RBP4.93□□□□□ -1.62
CD44-225ENST00000527326 CES1P1Q9UKY3 287 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 ZNF257Q9Y2Q1 563 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 HCFC2Q9Y5Z7 792 aa4.93□□□□□ -1.62
CD44-225ENST00000527326 HEATR5AQ86XA9 2040 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 NLRC5Q86WI3 1866 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 A0A0A6YYD5 115 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 CTXND1A0A1B0GTU2 59 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 TMEM213A2RRL7 107 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 CASTOR2A6NHX0 329 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 GRXCR1A8MXD5 290 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 SNURFLB1AK76 121 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 H3BUT2 72 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 H7C1C5 153 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 PRRG2O14669 202 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 NDUFS4O43181 175 aa4.92□□□□□ -1.62
CD44-225ENST00000527326 DHHO43323 396 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms