RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ZNF223Q9UK11 482 aaPredicted RBP3.56□□□□□ -1.84
CD44-220ENST00000525688 DNAH14Q0VDD8 3507 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 OTOGLQ3ZCN5 2332 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 MYOFQ9NZM1 2061 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 KIAA1549LQ6ZVL6 1849 aa3.56□□□□□ -1.84
CD44-220ENST00000525688 FANCMQ8IYD8 2048 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 TRAV39A0A0B4J263 110 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 C12orf77C9JDV5 145 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 SLC17A2O00624 439 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 ORC5O43913 435 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 CGAP01215 116 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 GYPCP04921 128 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 APODP05090 189 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 EIF4EP06730 217 aaKnown RBP3.55□□□□□ -1.84
CD44-220ENST00000525688 COX4I1P13073 169 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 CD34P28906 385 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 CA5AP35218 305 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 RCVRNP35243 200 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 CTRLP40313 264 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 HBG1P69891 147 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 HBG2P69892 147 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 RUNX1Q01196 453 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 TMEM255AQ5JRV8 349 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 ZNF684Q5T5D7 378 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 STEAP4Q687X5 459 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 UFSP1Q6NVU6 142 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 PAMR1Q6UXH9 720 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 NEGR1Q7Z3B1 354 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 CALHM3Q86XJ0 350 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 SLC35F6Q8N357 371 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 MUC15Q8N387 334 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 ZNF439Q8NDP4 499 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 ST6GALNAC3Q8NDV1 305 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 OR2A12Q8NGT7 310 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 MFSD8Q8NHS3 518 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 JOSD2Q8TAC2 188 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 IL22RA2Q969J5 263 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 EXOSC8Q96B26 276 aaKnown RBP3.55□□□□□ -1.84
CD44-220ENST00000525688 SEH1LQ96EE3 360 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 DCUN1D1Q96GG9 259 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 DIRAS2Q96HU8 199 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 HIST1H4GQ99525 98 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 C12orf57Q99622 126 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 RTBDNQ9BSG5 229 aaPredicted RBP3.55□□□□□ -1.84
CD44-220ENST00000525688 SUCNR1Q9BXA5 334 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 DHRS4-AS1Q9P1J3 65 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 XCL2Q9UBD3 114 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 SS18L2Q9UHA2 77 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 JPT1Q9UK76 154 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 FAM186AA6NE01 2351 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 PTPRZ1P23471 2315 aaPredicted RBP3.55□□□□□ -1.84
CD44-220ENST00000525688 SPTBN4Q9H254 2564 aa3.55□□□□□ -1.84
CD44-220ENST00000525688 IGLV3-10A0A075B6K4 115 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 IGHV3OR16-9A0A0B4J2B5 98 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 TEX50A0A1B0GTY4 177 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 RBFOX3A6NFN3 312 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 SIGLEC16A6NMB1 481 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 SRRM5B3KS81 715 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 TMX2-CTNND1H3BSU7 103 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 SLC17A3O00476 420 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 FAAHO00519 579 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 MFSD11O43934 449 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 TBL1XO60907 577 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 RDH16O75452 317 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 CRLF1O75462 422 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 OR2J2O76002 312 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 C6orf47O95873 294 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 REG1AP05451 166 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 OR5H8P0DN80 308 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 GPX2P18283 190 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 CXCL3P19876 107 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 SDC4P31431 198 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 NUDT1P36639 197 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 HSPE1P61604 102 aaKnown RBP3.54□□□□□ -1.84
CD44-220ENST00000525688 RPS24P62847 133 aaKnown RBP3.54□□□□□ -1.84
CD44-220ENST00000525688 PMVKQ15126 192 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 QPRTQ15274 297 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 TCTEX1D4Q5JR98 221 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 FAM162BQ5T6X4 162 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 SAMD13Q5VXD3 122 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 ANKRD22Q5VYY1 191 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 FBXL22Q6P050 247 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 WDR59Q6PJI9 974 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 UGT2A3Q6UWM9 527 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 STRADAQ7RTN6 431 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 TCF24Q7RTU0 167 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 NAA40Q86UY6 237 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 C17orf82Q86X59 251 aaPredicted RBP3.54□□□□□ -1.84
CD44-220ENST00000525688 ZNF567Q8N184 647 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 UBAC2Q8NBM4 344 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 ZNF485Q8NCK3 441 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 OR2K2Q8NGT1 345 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 OR10D3Q8NH80 312 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 WFDC5Q8TCV5 224 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 RGP1Q92546 391 aaPredicted RBP3.54□□□□□ -1.84
CD44-220ENST00000525688 L3HYPDHQ96EM0 354 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 MRPL48Q96GC5 212 aaKnown RBP3.54□□□□□ -1.84
CD44-220ENST00000525688 FMC1Q96HJ9 113 aa3.54□□□□□ -1.84
CD44-220ENST00000525688 SLIRPQ9GZT3 109 aaKnown RBP3.54□□□□□ -1.84
CD44-220ENST00000525688 CCDC90BQ9GZT6 254 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms