RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 PATZ1Q9HBE1 687 aaKnown RBP4.96□□□□□ -1.62
LSM1-202ENST00000520286 CA10Q9NS85 328 aa4.96□□□□□ -1.62
LSM1-202ENST00000520286 C14orf105Q9NVL8 296 aa4.96□□□□□ -1.62
LSM1-202ENST00000520286 NLE1Q9NVX2 485 aaPredicted RBP4.96□□□□□ -1.62
LSM1-202ENST00000520286 OR12D3Q9UGF7 316 aa4.96□□□□□ -1.62
LSM1-202ENST00000520286 PRG3Q9Y2Y8 225 aaPredicted RBP4.96□□□□□ -1.62
LSM1-202ENST00000520286 KPTNQ9Y664 436 aa4.96□□□□□ -1.62
LSM1-202ENST00000520286 ENPP4Q9Y6X5 453 aa4.96□□□□□ -1.62
LSM1-202ENST00000520286 KIF26AQ9ULI4 1882 aaPredicted RBP4.96□□□□□ -1.62
LSM1-202ENST00000520286 MTCL1Q9Y4B5 1905 aaKnown RBP4.95□□□□□ -1.62
LSM1-202ENST00000520286 IGLV11-55A0A075B6I3 123 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 SLC22A20A6NK97 555 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 COLCA2A8K830 154 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 DISC1C4P0D8 188 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 CCL22O00626 93 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 FGF16O43320 207 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 HCRTO43612 131 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 MPDU1O75352 247 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 IFNA10P01566 189 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 LIMS3P0CW19 117 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 LIMS4P0CW20 117 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 PRPS1L1P21108 318 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 CSRP1P21291 193 aaKnown RBP4.95□□□□□ -1.62
LSM1-202ENST00000520286 USF1P22415 310 aaPredicted RBP4.95□□□□□ -1.62
LSM1-202ENST00000520286 SRP9P49458 86 aaKnown RBP4.95□□□□□ -1.62
LSM1-202ENST00000520286 UBE2AP49459 152 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 CCR6P51684 374 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 XKP51811 444 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 GINS1Q14691 196 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 C3orf33Q6P1S2 294 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 CLEC20AQ6ZU45 233 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 TOMM5Q8N4H5 51 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 OR10AD1Q8NGE0 317 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 OR10G4Q8NGN3 311 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 OR10K1Q8NGX5 313 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 THEM6Q8WUY1 208 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 RNF138Q8WVD3 245 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 SMIM4Q8WVI0 70 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 TMEM203Q969S6 136 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 EXOSC8Q96B26 276 aaKnown RBP4.95□□□□□ -1.62
LSM1-202ENST00000520286 TSNAXQ99598 290 aaKnown RBP4.95□□□□□ -1.62
LSM1-202ENST00000520286 ZNF649Q9BS31 505 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 C2orf88Q9BSF0 95 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 PLA2G2FQ9BZM2 168 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 PARP12Q9H0J9 701 aaKnown RBP4.95□□□□□ -1.62
LSM1-202ENST00000520286 SLC38A1Q9H2H9 487 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 ASB8Q9H765 288 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 CACYBPQ9HB71 228 aaKnown RBP4.95□□□□□ -1.62
LSM1-202ENST00000520286 TAS2R5Q9NYW4 299 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 OPN4Q9UHM6 478 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 SNX10Q9Y5X0 201 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 PTPRDP23468 1912 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 CHD5Q8TDI0 1954 aa4.95□□□□□ -1.62
LSM1-202ENST00000520286 A0A1B0GV90 55 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 LRRN3E7EW58 273 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 H7C1H1 209 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 H7C417 338 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 FAAHO00519 579 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 ERI3O43414 337 aaKnown RBP4.94□□□□□ -1.62
LSM1-202ENST00000520286 CHST10O43529 356 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 KDELR3O43731 214 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 IGF2P01344 180 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 TACSTD2P09758 323 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 SLC2A1P11166 492 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 ERGP11308 486 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 PPP1CBP62140 327 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 PITPNAQ00169 270 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 CDK5Q00535 292 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 DEFA6Q01524 100 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 ZNF345Q14585 488 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 RGNQ15493 299 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 C18orf21Q32NC0 220 aaPredicted RBP4.94□□□□□ -1.62
LSM1-202ENST00000520286 RPL13AP3Q6NVV1 102 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 ARL9Q6T311 187 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 WDR82Q6UXN9 313 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 FBXW12Q6X9E4 464 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 ANGPTL5Q86XS5 388 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 UMODL1-AS1Q8N2C9 162 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 ARRDC1Q8N5I2 433 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 MDS2Q8NDY4 140 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 OR13C4Q8NGS5 318 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 EEF1AKMT1Q8WVE0 214 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 MALSU1Q96EH3 234 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 C14orf144Q96I85 54 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 TEAD3Q99594 435 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 SEC11CQ9BY50 192 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 ULBP1Q9BZM6 244 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 ARL6Q9H0F7 186 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 TPT1P8Q9HAU6 139 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 DDIT4Q9NX09 232 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 MTFP1Q9UDX5 166 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 FLVCR2Q9UPI3 526 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 SPEGQ15772 3267 aa4.94□□□□□ -1.62
LSM1-202ENST00000520286 ZZEF1O43149 2961 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 TRBV6-6A0A0A6YYG2 114 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 IGHV3-74A0A0B4J1X5 117 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 A0A0D9SG52 128 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 C1orf196B1AJZ1 125 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 NDUFS8O00217 210 aa4.93□□□□□ -1.62
LSM1-202ENST00000520286 PIRO00625 290 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms