RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CA7P43166 264 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 GLIPR1P48060 266 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 GNG4P50150 75 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 CRISP3P54108 245 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 SNU13P55769 128 aaKnown RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 H2BFSP57053 126 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 RPL15P61313 204 aaKnown RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 ARG2P78540 354 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 ADORA2A-AS1P86434 159 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 PNRC1Q12796 327 aaPredicted RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 RGNQ15493 299 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 IAH1Q2TAA2 248 aaPredicted RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 ALKBH6Q3KRA9 238 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 ATP6AP1LQ52LC2 224 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 TNFAIP8L2Q6P589 184 aaPredicted RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 TMEM207Q6UWW9 146 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 GFRALQ6UXV0 394 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 NHLRC1Q6VVB1 395 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 TMEM182Q6ZP80 229 aaPredicted RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 GTF2H5Q6ZYL4 71 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 DPY19L4Q7Z388 723 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 COMMD6Q7Z4G1 85 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 DOLPP1Q86YN1 238 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 TCTEX1D1Q8N7M0 179 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 ZFP41Q8N8Y5 198 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 NPEPL1Q8NDH3 523 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 OR8G5Q8NG78 346 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 OR4N2Q8NGD1 307 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 OR1N2Q8NGR9 330 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 OR6N1Q8NGY5 312 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 RHEBL1Q8TAI7 183 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 GPR148Q8TDV2 347 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 GPR119Q8TDV5 335 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 DOK4Q8TEW6 326 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 Q8WTZ3 238 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 GEMIN6Q8WXD5 167 aaKnown RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 APH1AQ96BI3 265 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 IMMP1LQ96LU5 166 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 GPR82Q96P67 336 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 TSSK3Q96PN8 268 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 TBX15Q96SF7 602 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 SLC25A21Q9BQT8 299 aaPredicted RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 C19orf24Q9BVV8 132 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 CTDSP1Q9GZU7 261 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 LIME1Q9H400 295 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 RHOJQ9H4E5 214 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 BANF2Q9H503 90 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 LRTM1Q9HBL6 345 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 MRPL16Q9NX20 251 aaKnown RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 MARCH4Q9P2E8 410 aaPredicted RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 GALPQ9UBC7 116 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 PSG8Q9UQ74 426 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 SIGLEC7Q9Y286 467 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 ZNF835Q9Y2P0 537 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 WIPI2Q9Y4P8 454 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 DYSFO75923 2080 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 LOC102723996A0A087X1L8 192 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 TRBV6-7A0A0A0MS04 114 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 TRAV38-1A0A0B4J264 116 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 IGKV1-8A0A0C4DH67 115 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 A0A1B0GTI1 187 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 ASPDHA6ND91 283 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 H0Y980 276 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 H0YGG7 62 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 H7BYZ3 331 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 DCTN6O00399 190 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 XKRYO14609 159 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 TNFRSF13BO14836 293 aaPredicted RBP4.59□□□□□ -1.67
NUP54-218ENST00000515460 ZNHIT1O43257 154 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 TRAF3IP2O43734 574 aaPredicted RBP4.59□□□□□ -1.67
NUP54-218ENST00000515460 CRLF1O75462 422 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 CNIH1O95406 144 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 SLC16A8O95907 504 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 HBZP02008 142 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 TYMSP04818 313 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 NGFRP08138 427 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 TFPIP10646 304 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 MVDP53602 400 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 MFAP4P55083 255 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 OR12D2P58182 307 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 TAS2R30P59541 319 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 PAFAH1B2P68402 229 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 C3AR1Q16581 482 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 SGCBQ16585 318 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 TRMT12Q53H54 448 aaKnown RBP4.59□□□□□ -1.67
NUP54-218ENST00000515460 TMEM128Q5BJH2 165 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 PAGE3Q5JUK9 113 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 SLC25A30Q5SVS4 291 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 TOMM20LQ6UXN7 152 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 FA2HQ7L5A8 372 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 SLC16A9Q7RTY1 509 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 CMC1Q7Z7K0 106 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 CALHM3Q86XJ0 350 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 CIARTQ8N365 385 aaPredicted RBP4.59□□□□□ -1.67
NUP54-218ENST00000515460 RNF175Q8N4F7 328 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 IQCF1Q8N6M8 205 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 CSNK1A1LQ8N752 337 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 TCEANCQ8N8B7 351 aa4.59□□□□□ -1.67
NUP54-218ENST00000515460 ACOT4Q8N9L9 421 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms