RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SNURFLB1AK76 121 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 CELA3AP09093 270 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 C10orf128Q5T292 105 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 PDPNQ86YL7 162 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 CALHM1Q8IU99 346 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 OR4X1Q8NH49 305 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 TAF15Q92804 592 aaKnown RBP eCLIP10.89□□□□□ -0.67
USP53-209ENST00000514665 FLYWCH2Q96CP2 140 aaKnown RBP10.89□□□□□ -0.67
USP53-209ENST00000514665 ANAPC16Q96DE5 110 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 CHRNA10Q9GZZ6 450 aa10.89□□□□□ -0.67
USP53-209ENST00000514665 OPN3Q9H1Y3 402 aaPredicted RBP10.89□□□□□ -0.67
USP53-209ENST00000514665 MELTFP08582 738 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 S100A4P26447 101 aaKnown RBP10.88□□□□□ -0.67
USP53-209ENST00000514665 MST1P26927 711 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 PRRX1P54821 245 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 RANP62826 216 aaKnown RBP10.88□□□□□ -0.67
USP53-209ENST00000514665 CA5BP1Q8WTZ4 195 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 GFI1Q99684 422 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 LYRM2Q9NU23 88 aaPredicted RBP10.88□□□□□ -0.67
USP53-209ENST00000514665 TRAV14DV4A0A0A6YYC5 116 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 OR2J3O76001 311 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 MPV17P39210 176 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 FAM3BP58499 235 aaPredicted RBP10.88□□□□□ -0.67
USP53-209ENST00000514665 SPCS3P61009 180 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 PRSS3P2Q8NHM4 247 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 OR2V2Q96R30 315 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 SMDT1Q9H4I9 107 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 PITPNC1Q9UKF7 332 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 PRNDQ9UKY0 176 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 MGST3O14880 152 aa10.88□□□□□ -0.67
USP53-209ENST00000514665 PTBP3O95758 552 aaKnown RBP10.88□□□□□ -0.67
USP53-209ENST00000514665 K7ESF4 209 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 SRSF10O75494 262 aaKnown RBP10.87□□□□□ -0.67
USP53-209ENST00000514665 HOXA6P31267 233 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 GABRA6Q16445 453 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 TMEM183BQ1AE95 376 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 CD3EP07766 207 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 SUCLG1P53597 346 aaKnown RBP10.87□□□□□ -0.67
USP53-209ENST00000514665 HIST3H3Q16695 136 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 FAM216AQ8WUB2 273 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 ITLN1Q8WWA0 313 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 LEAP2Q969E1 77 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 RAB24Q969Q5 203 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 WDR61Q9GZS3 305 aaKnown RBP10.87□□□□□ -0.67
USP53-209ENST00000514665 RBKSQ9H477 322 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 INSIG2Q9Y5U4 225 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 DANCRP0C864 163 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 PGA5P0DJD9 388 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 HLA-DRB5Q30154 266 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 VPS25Q9BRG1 176 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 GPR61Q9BZJ8 451 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 PRDM14Q9GZV8 571 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 PXMP4Q9Y6I8 212 aa10.87□□□□□ -0.67
USP53-209ENST00000514665 IGHV3-72A0A0B4J1Y9 119 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A10PA6NDY2 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A18PA6NE21 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A16PA6NEW6 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A20PA6NIJ5 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A8PA6NJQ4 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A7PA6NKC0 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A22PA8MWA6 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A12PA8MX19 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A5PA8MXJ8 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A23PA8MXZ1 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A15PP0C7V4 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A13PP0C7W8 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A14PP0C7W9 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FAM90A24PP0C7X0 464 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 MEGF10Q96KG7 1140 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 NUDT16L1Q9BRJ7 211 aaKnown RBP10.86□□□□□ -0.67
USP53-209ENST00000514665 NPVFQ9HCQ7 196 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 ZNF319Q9P2F9 582 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 LRRC3CA6NJW4 275 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 PDE6DO43924 150 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 ZG16O60844 167 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 NPIPB7O75200 414 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 CXorf1O96002 111 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 HSPB1P04792 205 aaKnown RBP10.86□□□□□ -0.67
USP53-209ENST00000514665 USF1P22415 310 aaPredicted RBP10.86□□□□□ -0.67
USP53-209ENST00000514665 GLIPR1P48060 266 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 OR1L8Q8NGR8 309 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 PCGF1Q9BSM1 259 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 RPRMQ9NS64 109 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 PAM16Q9Y3D7 125 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 NPTNQ9Y639 398 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 FANCMQ8IYD8 2048 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 VWA8A3KMH1 1905 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 A0A0G2JMM0 328 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 A0A1W2PPB8 328 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 A0A1W2PRS3 328 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 KIR3DP1A8MWS1 328 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 C16orf97H3BN30 126 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 NEURL1O76050 574 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 HPRT1P00492 218 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 IGFBP3P17936 291 aaPredicted RBP10.86□□□□□ -0.67
USP53-209ENST00000514665 MIC13Q5XKP0 118 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 WDR73Q6P4I2 378 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 OR1L6Q8NGR2 347 aa10.86□□□□□ -0.67
USP53-209ENST00000514665 A8MXK9 166 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 PLAUP00749 431 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms