RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 MS4A18Q3C1V0 323 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 Q6ZS52 159 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 BHLHA9Q7RTU4 235 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 POC1AQ8NBT0 407 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 NOXO1Q8NFA2 376 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 SSMEM1Q8WWF3 244 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 GEMIN7Q9H840 131 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 GLRX2Q9NS18 164 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 FFAR1O14842 300 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 CTLA4P16410 223 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 NXPH1P58417 271 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 RND3P61587 244 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 TM4SF20Q53R12 229 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 GBGT1Q8N5D6 347 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 PGLYRP3Q96LB9 341 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 PRELID3AQ96N28 172 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 MAP1LC3AQ9H492 121 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 ZNF665Q9H7R5 613 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 SEBOXQ9HB31 216 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 MRM2Q9UI43 246 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 ZFC3H1O60293 1989 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 CXorf51AA0A1B0GTR3 108 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 TMEM30CPA0ZSE6 113 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 FCGR2BP31994 310 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 GPX4P36969 197 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 SEC11AP67812 179 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 SSBP2P81877 361 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 SRSF6Q13247 344 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 SPANXN1Q5VSR9 72 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 FAM71F2Q6NXP2 309 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 SLC36A1Q7Z2H8 476 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 OR2Z1Q8NG97 314 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 SPSB2Q99619 263 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 WDR54Q9H977 334 aa7.62□□□□□ -1.19
LIMCH1-218ENST00000513024 DOCK1Q14185 1865 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 C1QL1O75973 258 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 NKX2-2O95096 273 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 SPINK8P0C7L1 97 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 SRSF5Q13243 272 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 FAM53BQ14153 422 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 TGIF1Q15583 401 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 UNC13CQ8NB66 2214 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 TMEM45BQ96B21 275 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 LINC00615Q96LM1 132 aaPredicted RBP7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 TSPAN32Q96QS1 320 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 FOXB1Q99853 325 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 HDGFL3Q9Y3E1 203 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 HILPDAQ9Y5L2 63 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 PPIAL4EA0A075B759 164 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 SERTM1A2A2V5 107 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 PPIAL4FP0DN26 164 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 ZNF415Q09FC8 603 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 TMEM215Q68D42 235 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 TUBA4BQ9H853 241 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 EDA2RQ9HAV5 297 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 DNAJB12Q9NXW2 375 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 PPIAL4AQ9Y536 164 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 TRAV30A0A087WSZ9 112 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 IGHV1OR15-9A0A0B4J2B8 117 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 SOCS1O15524 211 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 MFAP4P55083 255 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 ZNF117Q03924 483 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 C2orf83Q53S99 150 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 PRSS41Q7RTY9 318 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 APCDD1LQ8NCL9 501 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 TMEM101Q96IK0 257 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 AICDAQ9GZX7 198 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 PPP1R3EQ9H7J1 279 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 G6PC2Q9NQR9 355 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 CCL27Q9Y4X3 112 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 MGAMO43451 1857 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 TMSB15BA0A087X1C1 80 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 KBTBD11-OT1A0A1B0GTJ5 212 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 NGFP01138 241 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 MMDQ15546 238 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 DCAF12L2Q5VW00 463 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 CBLN3Q6UW01 205 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 TCF24Q7RTU0 167 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 OR4X2Q8NGF9 303 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 OR4D11Q8NGI4 311 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 QTRT1Q9BXR0 403 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 PCOLCE2Q9UKZ9 415 aa7.61□□□□□ -1.19
LIMCH1-218ENST00000513024 PDCD6O75340 191 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 GOSR1O95249 250 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 IGHV4-34P06331 123 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 LYZP61626 148 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 C19orf54Q5BKX5 351 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 ZNF562Q6V9R5 426 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 TMEM91Q6ZNR0 172 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 OR1B1Q8NGR6 318 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 ZNF519Q8TB69 540 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 NHP2Q9NX24 153 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 SIP14410 1827 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 IGHV3-13P01766 116 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 IGHV3-7P01780 117 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 ZGLP1P0C6A0 271 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 HOXB3P14651 431 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 SPINK2P20155 84 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 CSRP1P21291 193 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 HIST1H1AQ02539 215 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms