RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PRAMEF6Q5VXH4 476 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 SLC25A34Q6PIV7 304 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 TCF24Q7RTU0 167 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 OCC1Q8TAD7 63 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 GP6Q9HCN6 339 aa10.26□□□□□ -0.77
LIMCH1-213ENST00000511496 TRAV36DV7A0A075B6V5 113 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 A0A1W2PRU2 124 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 NPIPA5E9PKD4 350 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 NPIPA3F8WFD2 350 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 M0R2Z0 102 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 SPRY1O43609 319 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 IL11P20809 199 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 TIMP3P35625 211 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 HBG1P69891 147 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 HBG2P69892 147 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 MEF2CQ06413 473 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 TMEM177Q53S58 311 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 GAPTQ8N292 157 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 MRPL13Q9BYD1 178 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 WDR54Q9H977 334 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 SLC7A10Q9NS82 523 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 NPIPA1Q9UND3 350 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 COLQQ9Y215 455 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 C5orf63A6NC05 138 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 MGST1P10620 155 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 SGCBQ16585 318 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 NMSQ5H8A3 153 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 EBLN2Q6P2I7 272 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 OR10G6Q8NH81 332 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 CT55Q8WUE5 264 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 HOXB13Q92826 284 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 PERPQ96FX8 193 aa10.25□□□□□ -0.77
LIMCH1-213ENST00000511496 TRBV20OR9-2A0A075B6H5 130 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 H0YJW9 148 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 OR10J4P0C629 311 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 USF1P22415 310 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 OR1D4P47884 311 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 C16orf52Q8NHV5 167 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 BAHD1Q8TBE0 780 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 OR2A5Q96R48 311 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 IL36BQ9NZH7 164 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 NRG2O14511 850 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 FOXS1O43638 330 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 MRPL54Q6P161 138 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 RAB37Q96AX2 223 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 NUDT22Q9BRQ3 303 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 CLCF1Q9UBD9 225 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 OR4C46A6NHA9 309 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 LY6G5CQ5SRR4 150 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 ZNF818PQ6ZRF7 136 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 MMD2Q8IY49 270 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 OR51H1Q8NH63 302 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 SLC25A40Q8TBP6 338 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 FAM131CQ96AQ9 280 aa10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 TSSC4Q9Y5U2 329 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-213ENST00000511496 CDH23Q9H251 3354 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 H0Y8G0 127 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 CDIPTO14735 213 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 PVRP15151 417 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 CDAP32320 146 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 DAP3P51398 398 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 HSD52Q0P140 79 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 TNXAQ16473 311 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 ZNF295-AS1Q8N0V1 137 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 LMX1AQ8TE12 382 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 UBE2ZQ9H832 354 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 IL21Q9HBE4 155 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 TEX48A0A1B0GUV7 120 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 SLC35E2P0CK97 266 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 SCGB1A1P11684 91 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 GDF1P27539 372 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 PRSS12P56730 875 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 UBE2G1P62253 170 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 MYBPHQ13203 477 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 RAB31Q13636 194 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 ZNF776Q68DI1 518 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 KIR3DL3Q8N743 410 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 RAB40CQ96S21 281 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 GEMIN7Q9H840 131 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 INSL6Q9Y581 213 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 RER1O15258 196 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 SLC38A11Q08AI6 406 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 NXF5Q9H1B4 397 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 COPS7AQ9UBW8 275 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 PILRAQ9UKJ1 303 aa10.23□□□□□ -0.77
LIMCH1-213ENST00000511496 SYNGR2O43760 224 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 RBMXL2O75526 392 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 CD38P28907 300 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 DPTQ07507 201 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 OR10J3Q5JRS4 329 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 OR1F12Q8NHA8 337 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 ABHD14BQ96IU4 210 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 MCRIP2Q9BUT9 160 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 ZNF442Q9H7R0 627 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 CCL28Q9NRJ3 127 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 CACNG5Q9UF02 275 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 SS18L2Q9UHA2 77 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 FAM181BA6NEQ2 426 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 CYC1P08574 325 aa10.22□□□□□ -0.77
LIMCH1-213ENST00000511496 SMIM10L1P0DMW3 83 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms