RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 SELEP16581 610 aa13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 TFF3Q07654 80 aa13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 ZNF146Q15072 292 aa13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 KHDC3LQ587J8 217 aa13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 KRBOX4Q5JUW0 171 aa13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 C1QL4Q86Z23 238 aa13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 PSMG3Q9BT73 122 aaPredicted RBP13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 C20orf24Q9BUV8 137 aa13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 PARD6GQ9BYG4 376 aaPredicted RBP13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 OR1A1Q9P1Q5 309 aa13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 METTL1Q9UBP6 276 aaKnown RBP13.46□□□□□ -0.25
SQSTM1-213ENST00000510187 ZNF462Q96JM2 2506 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 A0A1B0GV50 99 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 FAM90A26D6RGX4 464 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 CRYAAP02489 173 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 SMIM6P0DI80 62 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 RAC2P15153 192 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 PPP1CBP62140 327 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 ICAM4Q14773 271 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 SCCPDHQ8NBX0 429 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 CLDND2Q8NHS1 167 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 IL1F10Q8WWZ1 152 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 YPEL4Q96NS1 127 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 TRAPPC2LQ9UL33 140 aa13.45□□□□□ -0.26
SQSTM1-213ENST00000510187 IQCF6A8MYZ5 107 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 SH2D1BO14796 132 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 SYNGR2O43760 224 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 IGKV1-39P01597 117 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 IGKV1D-39P04432 117 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 RPS23P62266 143 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 SNRPEP62304 92 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 RUNX1Q01196 453 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 SPATA46Q5T0L3 261 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 FIP1L1Q6UN15 594 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 TMEM108Q6UXF1 575 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 WDR86Q86TI4 376 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 ZBTB34Q8NCN2 500 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 ISOC2Q96AB3 205 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 TCEAL7Q9BRU2 100 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 NGBQ9NPG2 151 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 CACNG5Q9UF02 275 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 PUS1Q9Y606 427 aaKnown RBP eCLIP13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 RFNGQ9Y644 331 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 H3BQ15 152 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 OR2C1O95371 312 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 DAOP14920 347 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 CD40P25942 277 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 HBG1P69891 147 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 HBG2P69892 147 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 SLC25A24Q6NUK1 477 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 LINC01560Q8TB33 94 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 SCGB1C1Q8TD33 95 aa13.44□□□□□ -0.26
SQSTM1-213ENST00000510187 LOC102723971A0A1B0GUV8 181 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 A0A1W2PPE2 198 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 PCP4L1A6NKN8 68 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 SIRPB1O00241 398 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 EIF3GO75821 320 aaKnown RBP eCLIP13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 NXPH2O95156 264 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 NXPH3O95157 252 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 IGKV1-5P01602 117 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 ERVS71-1P61550 626 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 MSMO1Q15800 293 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 SLC35E3Q7Z769 313 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 THNSL2Q86YJ6 484 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 FAM24BQ8N5W8 94 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 BCL2L14Q9BZR8 327 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 OR2J1Q9GZK6 312 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 SIRT7Q9NRC8 400 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 ADGRG4Q8IZF6 3080 aa13.43□□□□□ -0.26
SQSTM1-213ENST00000510187 FAM208BQ5VWN6 2430 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 hCG_1809904A0A1W2PP81 198 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 A0A1W2PR64 198 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 A0A1W2PRV1 198 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 CXorf65A6NEN9 183 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 PPIHO43447 177 aaKnown RBP13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 IFNA17P01571 189 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 IGHV2-5P01817 119 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 SERF2P84101 59 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 TMEM267Q0VDI3 215 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 HAGHQ16775 308 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 ZNF585BQ52M93 769 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 Q6ZRM9 215 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 ZNF525Q8N782 197 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 SLC25A40Q8TBP6 338 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 MBD3L1Q8WWY6 194 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 TVP23CQ96ET8 276 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 HES4Q9HCC6 221 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 PSENENQ9NZ42 101 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 KCNS2Q9ULS6 477 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 DPRXA6NFQ7 191 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 ARG1P05089 322 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 BSPH1Q075Z2 132 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 HEPN1Q6WQI6 88 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 ZNF429Q86V71 674 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 RAB39BQ96DA2 213 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 NIPSNAP3BQ9BS92 247 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 PPP1R3CQ9UQK1 317 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 RBM7Q9Y580 266 aaKnown RBP13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 MMP24Q9Y5R2 645 aa13.42□□□□□ -0.26
SQSTM1-213ENST00000510187 TMEM30CPA0ZSE6 113 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms