RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 RFLNBQ8N5W9 214 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 RGP1Q92546 391 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-215ENST00000496447 SRD5A3Q9H8P0 318 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 PCM1Q15154 2024 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 M0R2Z0 102 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 SYNGR3O43761 229 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 IFI6P09912 130 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 LIMS1P48059 325 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 RIGQ13278 110 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 IZUMO4Q1ZYL8 232 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 GPR61Q9BZJ8 451 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 CSN3P07498 182 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 SMIM10L1P0DMW3 83 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 CEBPDP49716 269 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-215ENST00000496447 PPOXP50336 477 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 RIPPLY2Q5TAB7 128 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 MUC15Q8N387 334 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 OR4A5Q8NH83 315 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 SMIM10Q96HG1 83 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 GUCD1Q96NT3 240 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 GPX7Q96SL4 187 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-215ENST00000496447 TIMP4Q99727 224 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 LOC105371242A0A075B767 164 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 TRGC2P03986 189 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 LY6EQ16553 131 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 KLK13Q9UKR3 277 aa11.33□□□□□ -0.6
PTPRF-215ENST00000496447 DIRC3C9JPN6 131 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 HYPMO75409 117 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 ARF6P62330 175 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 EAF1Q96JC9 268 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-215ENST00000496447 PRDM14Q9GZV8 571 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 IDI2-AS1Q9NZ38 188 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 BRWD3Q6RI45 1802 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 IGHV1-69-2A0A0G2JMI3 117 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 DHRS7CA6NNS2 312 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 SIGLEC5O15389 551 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 RECKO95980 971 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 OR10G8Q8NGN5 311 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 UQCR10Q9UDW1 63 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 A0A1B0GV72 72 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 CXorf1O96002 111 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 FSTP19883 344 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 LTBRP36941 435 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 PRSS53Q2L4Q9 553 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 CYB5R2Q6BCY4 276 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 SLC35E3Q7Z769 313 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 CARHSP1Q9Y2V2 147 aaKnown RBP11.32□□□□□ -0.6
PTPRF-215ENST00000496447 A0A1W2PS18 150 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 ZNF253O75346 499 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 PRSS1P07477 247 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 LPAR5Q9H1C0 372 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 RGPD3A6NKT7 1758 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-215ENST00000496447 IGLV1-36A0A0B4J1U3 117 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 B9A039 149 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 RPL7P18124 248 aaKnown RBP11.32□□□□□ -0.6
PTPRF-215ENST00000496447 EIF4E3Q8N5X7 224 aaKnown RBP11.32□□□□□ -0.6
PTPRF-215ENST00000496447 METTL26Q96S19 204 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 PKIBQ9C010 78 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 KCNK7Q9Y2U2 307 aa11.32□□□□□ -0.6
PTPRF-215ENST00000496447 SRSF10O75494 262 aaKnown RBP11.31□□□□□ -0.6
PTPRF-215ENST00000496447 SNAI3Q3KNW1 292 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 PCSK4Q6UW60 755 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 MMD2Q8IY49 270 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 CALYQ9NYX4 217 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 SLC25A53Q5H9E4 307 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 RNFT1Q5M7Z0 435 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 CD1AP06126 327 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 LRRC75BQ2VPJ9 315 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 ZNF645Q8N7E2 425 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 ODAMA1E959 279 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 HELTA6NFD8 242 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 CEACAM18A8MTB9 384 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 PAGE4O60829 102 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 Q5BKY6 102 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 TMEM255AQ5JRV8 349 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 TMEM105Q8N8V8 129 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 LHFPL6Q9Y693 200 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 MYO16Q9Y6X6 1858 aa11.31□□□□□ -0.6
PTPRF-215ENST00000496447 COX5BP10606 129 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 HCP5Q6MZN7 132 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 ABHD17AQ96GS6 310 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 AMELYQ99218 206 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 SOSTQ9BQB4 213 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 PAXXQ9BUH6 204 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 SUCLG1P53597 346 aaKnown RBP11.3□□□□□ -0.6
PTPRF-215ENST00000496447 RPL8P62917 257 aaKnown RBP11.3□□□□□ -0.6
PTPRF-215ENST00000496447 C16orf92Q96LL3 132 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 TMSB15BA0A087X1C1 80 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 FOXH1O75593 365 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 IGLV3-21P80748 117 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-215ENST00000496447 TM4SF20Q53R12 229 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 CBLN4Q9NTU7 201 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 CORTO00230 105 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 RHBDL1O75783 438 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 SCTP09683 121 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 VSIG10L2P0DP72 767 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 RRN3P1Q2M238 152 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 SAPCD1Q5SSQ6 148 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 DCAF12L2Q5VW00 463 aa11.3□□□□□ -0.6
PTPRF-215ENST00000496447 SIGLEC12Q96PQ1 595 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms