RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 CEACAM19Q7Z692 300 aa17.92■□□□□ 0.46
COL27A1-208ENST00000494780 OR6M1Q8NGM8 313 aa17.92■□□□□ 0.46
COL27A1-208ENST00000494780 ARPC1AQ92747 370 aa17.92■□□□□ 0.46
COL27A1-208ENST00000494780 FLYWCH2Q96CP2 140 aaKnown RBP17.92■□□□□ 0.46
COL27A1-208ENST00000494780 A0A0A6YYD4 124 aa17.91■□□□□ 0.46
COL27A1-208ENST00000494780 ARPC1BO15143 372 aaKnown RBP17.91■□□□□ 0.46
COL27A1-208ENST00000494780 HSPB1P04792 205 aaKnown RBP17.91■□□□□ 0.46
COL27A1-208ENST00000494780 CDK1P06493 297 aa17.91■□□□□ 0.46
COL27A1-208ENST00000494780 CD40LGP29965 261 aa17.91■□□□□ 0.46
COL27A1-208ENST00000494780 PITPNAQ00169 270 aa17.91■□□□□ 0.46
COL27A1-208ENST00000494780 URM1Q9BTM9 101 aaKnown RBP17.91■□□□□ 0.46
COL27A1-208ENST00000494780 C11orf54Q9H0W9 315 aaPredicted RBP17.91■□□□□ 0.46
COL27A1-208ENST00000494780 LPAR5Q9H1C0 372 aa17.91■□□□□ 0.46
COL27A1-208ENST00000494780 SLA2Q9H6Q3 261 aa17.91■□□□□ 0.46
COL27A1-208ENST00000494780 METTL1Q9UBP6 276 aaKnown RBP17.91■□□□□ 0.46
COL27A1-208ENST00000494780 AK3Q9UIJ7 227 aa17.91■□□□□ 0.46
COL27A1-208ENST00000494780 GAB2Q9UQC2 676 aa17.91■□□□□ 0.46
COL27A1-208ENST00000494780 IGHV3-11P01762 117 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 UCHL1P09936 223 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 FRMD6-AS1P0C7T7 363 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 CEACAM6P40199 344 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 HLA-DRB3P79483 266 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 PSG5Q15238 335 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 SPHARQ15513 63 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 OVCH2Q7RTZ1 564 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 LFNGQ8NES3 379 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 RHOVQ96L33 236 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 MS4A10Q96PG2 267 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 OR4C12Q96R67 309 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 CLCC1Q96S66 551 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 FAM103A1Q9BTL3 118 aaKnown RBP17.9■□□□□ 0.46
COL27A1-208ENST00000494780 OR1A1Q9P1Q5 309 aa17.9■□□□□ 0.46
COL27A1-208ENST00000494780 SOCS1O15524 211 aa17.89■□□□□ 0.45
COL27A1-208ENST00000494780 HSPA12AO43301 675 aa17.89■□□□□ 0.45
COL27A1-208ENST00000494780 SPDEFO95238 335 aa17.89■□□□□ 0.45
COL27A1-208ENST00000494780 TPPP2P59282 170 aa17.89■□□□□ 0.45
COL27A1-208ENST00000494780 CASC10Q5T4H9 136 aa17.89■□□□□ 0.45
COL27A1-208ENST00000494780 OGFRL1Q5TC84 451 aaPredicted RBP17.89■□□□□ 0.45
COL27A1-208ENST00000494780 FAM89BQ8N5H3 189 aa17.89■□□□□ 0.45
COL27A1-208ENST00000494780 PTX4Q96A99 478 aa17.89■□□□□ 0.45
COL27A1-208ENST00000494780 TSNAXQ99598 290 aaKnown RBP17.89■□□□□ 0.45
COL27A1-208ENST00000494780 HDHD3Q9BSH5 251 aaPredicted RBP17.89■□□□□ 0.45
COL27A1-208ENST00000494780 HSF4Q9ULV5 492 aa17.89■□□□□ 0.45
COL27A1-208ENST00000494780 LSM2Q9Y333 95 aaKnown RBP17.89■□□□□ 0.45
COL27A1-208ENST00000494780 PROP1O75360 226 aa17.88■□□□□ 0.45
COL27A1-208ENST00000494780 CA2P00918 260 aa17.88■□□□□ 0.45
COL27A1-208ENST00000494780 TFAP2AP05549 437 aa17.88■□□□□ 0.45
COL27A1-208ENST00000494780 CPEP16870 476 aa17.88■□□□□ 0.45
COL27A1-208ENST00000494780 ZMAT4Q9H898 229 aa17.88■□□□□ 0.45
COL27A1-208ENST00000494780 Q9N2K0 584 aa17.88■□□□□ 0.45
COL27A1-208ENST00000494780 ZNF221Q9UK13 617 aa17.88■□□□□ 0.45
COL27A1-208ENST00000494780 TRIM64CA6NLI5 447 aa17.87■□□□□ 0.45
COL27A1-208ENST00000494780 CASQ2O14958 399 aaPredicted RBP17.87■□□□□ 0.45
COL27A1-208ENST00000494780 ARSBP15848 533 aa17.87■□□□□ 0.45
COL27A1-208ENST00000494780 RPS16P62249 146 aaKnown RBP17.87■□□□□ 0.45
COL27A1-208ENST00000494780 DRAXINQ8NBI3 349 aaPredicted RBP17.87■□□□□ 0.45
COL27A1-208ENST00000494780 ELOVL1Q9BW60 279 aa17.87■□□□□ 0.45
COL27A1-208ENST00000494780 C12orf4Q9NQ89 552 aa17.87■□□□□ 0.45
COL27A1-208ENST00000494780 FOXI3A8MTJ6 420 aaPredicted RBP17.86■□□□□ 0.45
COL27A1-208ENST00000494780 PTGES3LE9PB15 166 aa17.86■□□□□ 0.45
COL27A1-208ENST00000494780 SLC17A2O00624 439 aa17.86■□□□□ 0.45
COL27A1-208ENST00000494780 IGKV1-16P04430 117 aa17.86■□□□□ 0.45
COL27A1-208ENST00000494780 SCTP09683 121 aa17.86■□□□□ 0.45
COL27A1-208ENST00000494780 MED22Q15528 200 aa17.86■□□□□ 0.45
COL27A1-208ENST00000494780 PDPNQ86YL7 162 aa17.86■□□□□ 0.45
COL27A1-208ENST00000494780 ZNF383Q8NA42 475 aa17.86■□□□□ 0.45
COL27A1-208ENST00000494780 PLGRKTQ9HBL7 147 aa17.86■□□□□ 0.45
COL27A1-208ENST00000494780 HUWE1Q7Z6Z7 4374 aaKnown RBP17.86■□□□□ 0.45
COL27A1-208ENST00000494780 APOA2P02652 100 aa17.85■□□□□ 0.45
COL27A1-208ENST00000494780 TRGV3P03979 118 aa17.85■□□□□ 0.45
COL27A1-208ENST00000494780 P2RY14Q15391 338 aa17.85■□□□□ 0.45
COL27A1-208ENST00000494780 UFD1Q92890 307 aa17.85■□□□□ 0.45
COL27A1-208ENST00000494780 GFI1Q99684 422 aa17.85■□□□□ 0.45
COL27A1-208ENST00000494780 VCXQ9H320 206 aa17.85■□□□□ 0.45
COL27A1-208ENST00000494780 STUB1Q9UNE7 303 aa17.85■□□□□ 0.45
COL27A1-208ENST00000494780 H3BUA1 57 aa17.84■□□□□ 0.45
COL27A1-208ENST00000494780 SNRPBP14678 240 aaKnown RBP17.84■□□□□ 0.45
COL27A1-208ENST00000494780 TMEM50BP56557 158 aa17.84■□□□□ 0.45
COL27A1-208ENST00000494780 FXYD3Q14802 87 aa17.84■□□□□ 0.45
COL27A1-208ENST00000494780 SRSF7Q16629 238 aaKnown RBP eCLIP17.84■□□□□ 0.451e-7■□□□□ 10.1
COL27A1-208ENST00000494780 LIPKQ5VXJ0 399 aa17.84■□□□□ 0.45
COL27A1-208ENST00000494780 POC5Q8NA72 575 aa17.84■□□□□ 0.45
COL27A1-208ENST00000494780 CMSS1Q9BQ75 279 aaKnown RBP17.84■□□□□ 0.45
COL27A1-208ENST00000494780 RANGRFQ9HD47 186 aaPredicted RBP17.84■□□□□ 0.45
COL27A1-208ENST00000494780 SCN3BQ9NY72 215 aa17.84■□□□□ 0.45
COL27A1-208ENST00000494780 IGKV1-6A0A0C4DH72 117 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 SLC25A17O43808 307 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 IGLV1-51P01701 117 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 ZP3P21754 424 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 VEGFCP49767 419 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 LINC00205P59089 165 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 IRF3Q14653 427 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.83■□□□□ 0.44
COL27A1-208ENST00000494780 GRPEL2Q8TAA5 225 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 TMEM203Q969S6 136 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 ARHGAP5-AS1Q96IT6 56 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 PECRQ9BY49 303 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 ZNF355PQ9NSJ1 428 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 RDH8Q9NYR8 311 aa17.83■□□□□ 0.44
COL27A1-208ENST00000494780 C13orf42A0A1B0GVH6 325 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms