RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 ZNF561Q8N587 486 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 PRR7Q8TB68 274 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 RAB39BQ96DA2 213 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 CLN8Q9UBY8 286 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 NBEAQ8NFP9 2946 aa9.38□□□□□ -0.91
CHMP3-209ENST00000494623 INTS1Q8N201 2190 aaKnown RBP9.37□□□□□ -0.91
CHMP3-209ENST00000494623 UBE2L5PA0A1B0GUS4 154 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 ST8SIA5O15466 376 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 RBMXL2O75526 392 aaKnown RBP9.37□□□□□ -0.91
CHMP3-209ENST00000494623 CGAP01215 116 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 HSPB1P04792 205 aaKnown RBP9.37□□□□□ -0.91
CHMP3-209ENST00000494623 PLA2G5P39877 138 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 BRWD1-AS2P59051 145 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 SLC38A11Q08AI6 406 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 CATR1Q13166 79 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 MSMO1Q15800 293 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 PSG11Q9UQ72 335 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 LAMA5O15230 3695 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 DMXL1Q9Y485 3027 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 ODAMA1E959 279 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 S100A6P06703 90 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 OR2B8PP59922 312 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 RPS23P62266 143 aaKnown RBP9.37□□□□□ -0.91
CHMP3-209ENST00000494623 P2RY6Q15077 328 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF726P1Q15940 193 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 SPINK9Q5DT21 86 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 MBNL2Q5VZF2 373 aaKnown RBP9.37□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF787Q6DD87 383 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 VHLLQ6RSH7 139 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 SSX7Q7RTT5 188 aa9.37□□□□□ -0.91
CHMP3-209ENST00000494623 WDR61Q9GZS3 305 aaKnown RBP9.37□□□□□ -0.91
CHMP3-209ENST00000494623 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.37□□□□□ -0.91
CHMP3-209ENST00000494623 IGHV3OR15-7A0A075B7D8 119 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF98A6NK75 572 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 LRRC30A6NM36 301 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 FAM90A26D6RGX4 464 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 IFNL4K9M1U5 179 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 M0R1B8 84 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 EGR1P18146 543 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 TUBG1P23258 451 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 DLK1P80370 383 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 EIF4EBP1Q13541 118 aaPredicted RBP9.36□□□□□ -0.91
CHMP3-209ENST00000494623 MSMPQ1L6U9 139 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 Q3ZCU0 254 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 LURAP1Q96LR2 239 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF665Q9H7R5 613 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 TUBG2Q9NRH3 451 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 COA4Q9NYJ1 87 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 SLC25A15Q9Y619 301 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 USF3Q68DE3 2245 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 A0A1W2PPE3 182 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 LINC00473A8K010 186 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 IGHV3-13P01766 116 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 IGHV3-7P01780 117 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 EIF2S3LQ2VIR3 472 aaKnown RBP9.36□□□□□ -0.91
CHMP3-209ENST00000494623 KHDC3LQ587J8 217 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 H2BFWTQ7Z2G1 175 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 TAF15Q92804 592 aaKnown RBP eCLIP9.36□□□□□ -0.91
CHMP3-209ENST00000494623 ZDHHC16Q969W1 377 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 C12orf57Q99622 126 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 HSPB7Q9UBY9 170 aa9.36□□□□□ -0.91
CHMP3-209ENST00000494623 TRAV1-1A0A0B4J248 108 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 LOC102723971A0A1B0GUV8 181 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 SPINT2O43291 252 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 ZG16O60844 167 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 AGAP20933 346 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 RAB11AP62491 216 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 SPRNQ5BIV9 151 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 TMEM14EPQ6UXP3 125 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 RPRMLQ8N4K4 120 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 TVP23CQ96ET8 276 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 NIPSNAP3BQ9BS92 247 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 PSMG3Q9BT73 122 aaPredicted RBP9.35□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF891A8MT65 544 aaPredicted RBP9.35□□□□□ -0.91
CHMP3-209ENST00000494623 SERF2P84101 59 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 S100PBPQ96BU1 408 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 RCC1LQ96I51 464 aaKnown RBP9.35□□□□□ -0.91
CHMP3-209ENST00000494623 TOLLIPQ9H0E2 274 aa9.35□□□□□ -0.91
CHMP3-209ENST00000494623 IGKV1D-17A0A075B6S4 117 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 PPIHO43447 177 aaKnown RBP9.34□□□□□ -0.91
CHMP3-209ENST00000494623 OR8U8P0C7N1 319 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 P0C879 139 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 MZT1Q08AG7 82 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 TMEM41BQ5BJD5 291 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 ZNF474Q6S9Z5 364 aaPredicted RBP9.34□□□□□ -0.91
CHMP3-209ENST00000494623 DTD1Q8TEA8 209 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 MBD3L1Q8WWY6 194 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 HIPK2Q9H2X6 1198 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 GNG12Q9UBI6 72 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 WASF3Q9UPY6 502 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 URGCP-MRPS24S4R325 110 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 MBD3L4A6NDZ8 208 aaPredicted RBP9.34□□□□□ -0.91
CHMP3-209ENST00000494623 MBD3L3A6NE82 208 aaPredicted RBP9.34□□□□□ -0.91
CHMP3-209ENST00000494623 MBD3L5A6NJ08 208 aaPredicted RBP9.34□□□□□ -0.91
CHMP3-209ENST00000494623 CEBPZOSA8MTT3 80 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 C15orf65H3BRN8 121 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 HMGB3O15347 200 aaKnown RBP9.34□□□□□ -0.91
CHMP3-209ENST00000494623 SPRY3O43610 288 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 CLDN14O95500 239 aa9.34□□□□□ -0.91
CHMP3-209ENST00000494623 IFNA4P05014 189 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms