RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FAM90A2PQ658T7 463 aa13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 H1FOOQ8IZA3 346 aaPredicted RBP13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 TMEM204Q9BSN7 226 aa13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 OPA3Q9H6K4 179 aa13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 OBP2BQ9NPH6 170 aa13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 CLDN1O95832 211 aa13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 IGLV2-14P01704 120 aa13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 GLIPR1P48060 266 aa13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 RCC1LQ96I51 464 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-210ENST00000494566 OR10V1Q8NGI7 309 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 GNPNAT1Q96EK6 184 aaPredicted RBP13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 GMPPAQ96IJ6 420 aaPredicted RBP13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 PARD6AQ9NPB6 346 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 LAMP3Q9UQV4 416 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 KALRNO60229 2985 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 POLEQ07864 2286 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 LOC102723971A0A1B0GUV8 181 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 H0Y980 276 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 PSPNO60542 156 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 ZNF506Q5JVG8 444 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 ZNF600Q6ZNG1 722 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 HIST3H2BBQ8N257 126 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 OR4C12Q96R67 309 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 CLN8Q9UBY8 286 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 PIEZO2Q9H5I5 2752 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 IGKV1D-33P01593 117 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 IGKV1-33P01594 117 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 CTXN2P0C2S0 81 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 PRAMEF6Q5VXH4 476 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 C9orf106Q8NAJ2 232 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 TMEM37Q8WXS4 190 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 PKIBQ9C010 78 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 FAM234AQ9H0X4 552 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 MSL2Q9HCI7 577 aa13.91□□□□□ -0.18
CCDC88B-210ENST00000494566 A0A0U1RQK1 487 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 A0A1W2PPQ1 181 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 DEFB108AA8MXU0 73 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 RAMP3O60896 148 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 IGKV1-5P01602 117 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 CEACAM6P40199 344 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 FABP6P51161 128 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 P2RY6Q15077 328 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 OR8G1Q15617 311 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 OR5D13Q8NGL4 314 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 KLF14Q8TD94 323 aaPredicted RBP13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 IGHV3-43A0A0B4J1X8 118 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 A0A1B0GUS0 222 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 CRYAAP02489 173 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 FTH1P19P0C7X4 201 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 IGHV3-43DP0DP04 118 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 GABRA6Q16445 453 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 SRSF7Q16629 238 aaKnown RBP eCLIP13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 LHX4Q969G2 390 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 MALSU1Q96EH3 234 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 PACRGQ96M98 296 aaPredicted RBP13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 SMIM7Q9BQ49 75 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 PRDM13Q9H4Q3 707 aa13.9□□□□□ -0.18
CCDC88B-210ENST00000494566 BSNQ9UPA5 3926 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 LRP5LA4QPB2 252 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 MAP1LC3B2A6NCE7 125 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 MLNRO43193 412 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 SYNGR2O43760 224 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 HSPB1P04792 205 aaKnown RBP13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 G6PCP35575 357 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 UBE2G2P60604 165 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 FAM214BQ7L5A3 538 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 C1orf87Q8N0U7 546 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 ZDHHC16Q969W1 377 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 MAP1LC3BQ9GZQ8 125 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 UNKLQ9H9P5 680 aaKnown RBP13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 CLCF1Q9UBD9 225 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 PGPEP1LA6NFU8 196 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 SNRPCP09234 159 aaKnown RBP13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 BCL2P10415 239 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 AESQ08117 197 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 ZNF497Q6ZNH5 498 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 OR1L1Q8NH94 360 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 RFESDQ8TAC1 157 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 RIMS4Q9H426 269 aaPredicted RBP13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 GFOD1Q9NXC2 390 aa13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 TPRP12270 2363 aaKnown RBP13.89□□□□□ -0.19
CCDC88B-210ENST00000494566 OR5H1A6NKK0 313 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 TGFBR3Q03167 851 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 DMRTC2Q8IXT2 367 aaPredicted RBP13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 DMRT1Q9Y5R6 373 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 ZNF737O75373 536 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 ERVK11-1P61568 191 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 MRPL49Q13405 166 aaKnown RBP13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 USF2Q15853 346 aaPredicted RBP13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 DEFB109BQ30KR1 87 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 C16orf82Q7Z2V1 217 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 LINC00596Q86U02 117 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 SDSLQ96GA7 329 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 METRNQ9UJH8 293 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 WASF3Q9UPY6 502 aa13.88□□□□□ -0.19
CCDC88B-210ENST00000494566 SEC14L6B5MCN3 397 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 KIR2DL2P43627 348 aaPredicted RBP13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 Q6ZR03 302 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 C14orf144Q96I85 54 aa13.87□□□□□ -0.19
CCDC88B-210ENST00000494566 SLC39A9Q9NUM3 307 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms