RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 COMMD1Q8N668 190 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 Q8TCH9 128 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 EDARADDQ8WWZ3 215 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 C14orf79Q96F83 325 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 GNG12Q9UBI6 72 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 DSCAMO60469 2012 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 F2RL2O00254 374 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 NUPL2O15504 423 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 CYB5R3P00387 301 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 MORN2Q502X0 79 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 STUMQ69YW2 141 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 ZNF561Q8N587 486 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 FAM213BQ8TBF2 198 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 C17orf50Q8WW18 174 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 HSD17B10Q99714 261 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 PLCE1Q9P212 2302 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 RAI1Q7Z5J4 1906 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 MED19A0JLT2 244 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 TSPAN4O14817 238 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 DFFBO76075 338 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 SFTA3P0C7M3 94 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 LOXL3P58215 753 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 TAS2R30P59541 319 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 BSPH1Q075Z2 132 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 GNPNAT1Q96EK6 184 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 SDSLQ96GA7 329 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 NCOR1P1Q9H4R4 102 aa17.53■□□□□ 0.4
CCDC88B-208ENST00000492980 USF3Q68DE3 2245 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 CEP295Q9C0D2 2601 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 FAM74A7A6NL05 159 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 UMAD1C9J7I0 102 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 YPEL1O60688 119 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 LINC00205P59089 165 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 RUNX1Q01196 453 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 FAM74A3Q4VXF1 159 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 DUX4L9Q6RFH8 374 aaPredicted RBP17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 YPEL2Q96QA6 119 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 SCRT1Q9BWW7 348 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 OR6C3Q9NZP0 311 aa17.52■□□□□ 0.4
CCDC88B-208ENST00000492980 PIEZO2Q9H5I5 2752 aa17.52■□□□□ 0.39
CCDC88B-208ENST00000492980 CGB3P0DN86 165 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 CGB7P0DN87 165 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 GPR12P47775 334 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 UBE2KP61086 200 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 NHLH1Q02575 133 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 TNFRSF9Q07011 255 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 ADIPOQQ15848 244 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 FAM216AQ8WUB2 273 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 PLPPR2Q96GM1 343 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 CALYQ9NYX4 217 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 HSPB7Q9UBY9 170 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 CLDN14O95500 239 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 F12P00748 615 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 METTL15P1P0C7V9 234 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 TAGLNQ01995 201 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 ARL16Q0P5N6 197 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 HAPLN4Q86UW8 402 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 ABHD14AQ9BUJ0 271 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 RBKSQ9H477 322 aa17.51■□□□□ 0.39
CCDC88B-208ENST00000492980 MAP1BP46821 2468 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 PROP1O75360 226 aa17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 OR4A8P0C604 315 aa17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 TMPRSS3P57727 454 aa17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 RBPJQ06330 500 aa17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 TGIF2LYQ8IUE0 185 aa17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 GAFA1Q96PS6 74 aa17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 LRRC30A6NM36 301 aa17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 DUTP33316 252 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 GUK1Q16774 197 aa17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 C17orf58Q2M2W7 97 aa17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 SSX8Q7RTT4 187 aa17.5■□□□□ 0.39
CCDC88B-208ENST00000492980 DYSFO75923 2080 aa17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 DSCAML1Q8TD84 2053 aa17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 DIDO1Q9BTC0 2240 aaKnown RBP17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 LOC105371267A0A1B0GV96 52 aa17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 RAB29O14966 203 aa17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 GFRA3O60609 400 aa17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 NCR3LG1Q68D85 454 aa17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 DEFB108BQ8NET1 73 aa17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 DCAF16Q9NXF7 216 aa17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 LAMP3Q9UQV4 416 aa17.49■□□□□ 0.39
CCDC88B-208ENST00000492980 IFNA5P01569 189 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 ZNF134P52741 427 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 SPANXN5Q5MJ07 72 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 ZNF525Q8N782 197 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 RND1Q92730 232 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 IFI27L2Q9H2X8 130 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 ICE1Q9Y2F5 2266 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 PTPRQQ9UMZ3 2332 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 SNAPINO95295 136 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 CD55P08174 381 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 TEX36Q5VZQ5 186 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 ZNF788Q6ZQV5 615 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 DIRC2Q96SL1 478 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 CCL13Q99616 98 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 ZNF665Q9H7R5 613 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 TANC2Q9HCD6 1990 aa17.48■□□□□ 0.39
CCDC88B-208ENST00000492980 C17orf100A8MU93 164 aa17.47■□□□□ 0.39
CCDC88B-208ENST00000492980 GYPAP02724 150 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms