RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 IL19Q9UHD0 177 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 COX19Q49B96 90 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 OR5AU1Q8NGC0 362 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 PHYHIPLQ96FC7 376 aa11.33□□□□□ -0.6
COL6A3-212ENST00000491769 OR9G1Q8NH87 305 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 KLF14Q8TD94 323 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-212ENST00000491769 FUT9Q9Y231 359 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 NUP205Q92621 2012 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 H3BTX0 84 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 LY6DQ14210 128 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 DMKNQ6E0U4 476 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-212ENST00000491769 ZNF343Q6P1L6 599 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 WDFY1Q8IWB7 410 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 ATG2BQ96BY7 2078 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 A6NDN8 102 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 CEACAM4O75871 244 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 IGSF11Q5DX21 431 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 ST6GALNAC2Q9UJ37 374 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 MRPS16Q9Y3D3 137 aaKnown RBP11.32□□□□□ -0.6
COL6A3-212ENST00000491769 VSIG8P0DPA2 414 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 CEACAM1P13688 526 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 CD99P14209 185 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 DLK1P80370 383 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 ZNF430Q9H8G1 570 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-212ENST00000491769 METRNQ9UJH8 293 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 CTXND1A0A1B0GTU2 59 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 FGF12P61328 243 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 CD69Q07108 199 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 PNRC1Q12796 327 aaPredicted RBP11.32□□□□□ -0.6
COL6A3-212ENST00000491769 DPPA3Q6W0C5 159 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 OR4D11Q8NGI4 311 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 OPN4Q9UHM6 478 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 HS3ST3B1Q9Y662 390 aa11.32□□□□□ -0.6
COL6A3-212ENST00000491769 COX6A1P12074 109 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 CDKN1AP38936 164 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 AKIP1Q9NQ31 210 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 MOSPD3O75425 235 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 FAM27E3Q08E93 113 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 PEAR1Q5VY43 1037 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-212ENST00000491769 ODAMA1E959 279 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 OGG1O15527 345 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 IGKV1D-16P01601 117 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 VDAC2P45880 294 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-212ENST00000491769 DNM1P46Q6ZS02 220 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 CLRN3Q8NCR9 226 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 CROCCQ5TZA2 2017 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 TP53RKQ96S44 253 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.31□□□□□ -0.6
COL6A3-212ENST00000491769 LOC107984156A0A0G2JMH3 177 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 ARL17AQ8IVW1 177 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 C11orf44Q8N8P7 122 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 PGLYRP4Q96LB8 373 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 S4R3C0 116 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 SCN9AQ15858 1988 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 GDF9O60383 454 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 MFAP2P55001 183 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 SLC16A13Q7RTY0 426 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 LINC01587Q99440 93 aa11.31□□□□□ -0.6
COL6A3-212ENST00000491769 CD160O95971 181 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 MMP9P14780 707 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 MARVELD3Q96A59 401 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 PKD1L3Q7Z443 1732 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 TRGV2A0A075B6R0 118 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 DSPPQ9NZW4 1301 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 RBFOX2O43251 390 aaKnown RBP eCLIP11.3□□□□□ -0.6
COL6A3-212ENST00000491769 SCTP09683 121 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 SNRPEP62304 92 aaKnown RBP11.3□□□□□ -0.6
COL6A3-212ENST00000491769 AQP10Q96PS8 301 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 NEU3Q9UQ49 428 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 PROB1E7EW31 1015 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 IGHV3-48P01763 117 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 COPS9Q8WXC6 57 aa11.3□□□□□ -0.6
COL6A3-212ENST00000491769 TRAV8-7A0A075B6U6 113 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 FOXI3A8MTJ6 420 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-212ENST00000491769 A8MWL6 223 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 QTRT1Q9BXR0 403 aaKnown RBP11.29□□□□□ -0.6
COL6A3-212ENST00000491769 TMEM238LA0A1B0GVL6 79 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 A6NJY4 79 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 ZP3P21754 424 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 FAM209AQ5JX71 171 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 SIGIRRQ6IA17 410 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 RBKSQ9H477 322 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 ZIC3O60481 467 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 PTP4A3O75365 173 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 SELENOTP62341 195 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 SRXN1Q9BYN0 137 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 TNFRSF18Q9Y5U5 241 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 TMEM218A2RU14 115 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 FBLL1A6NHQ2 334 aaKnown RBP11.29□□□□□ -0.6
COL6A3-212ENST00000491769 ZP4Q12836 540 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 NEU4Q8WWR8 484 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-212ENST00000491769 HSF4Q9ULV5 492 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 CA2P00918 260 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 ZPLD1Q8TCW7 415 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 MAP1LC3AQ9H492 121 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 PEMTQ9UBM1 199 aa11.29□□□□□ -0.6
COL6A3-212ENST00000491769 C17orf51A8MQB3 221 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 COMPP49747 757 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-212ENST00000491769 RHOVQ96L33 236 aa11.28□□□□□ -0.6
COL6A3-212ENST00000491769 SCN3AQ9NY46 2000 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms