RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	GLT6D1	Q7Z4J2	308 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	SLC13A5	Q86YT5	568 aa	Predicted RBP	0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	FUNDC1	Q8IVP5	155 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	BLID	Q8IZY5	108 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	SLC35F6	Q8N357	371 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	C17orf78	Q8N4C9	275 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	ZNF283	Q8N7M2	679 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	FNDC9	Q8TBE3	224 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	SPACA4	Q8TDM5	124 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	DNAJB3	Q8WWF6	145 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	FGF13	Q92913	245 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	PPWD1	Q96BP3	646 aa	Known RBP	0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	ACY3	Q96HD9	319 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	MND1	Q9BWT6	205 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	UGT2B28	Q9BY64	529 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	DRC3	Q9H069	523 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	SPACA1	Q9HBV2	294 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	ASCL3	Q9NQ33	180 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	GLS2	Q9UI32	602 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	SNX12	Q9UMY4	172 aa		0.93	□□□□□ -2.26
PTPN4-212	ENST00000488896	MAP3K19	Q56UN5	1328 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	IGHV3-15	A0A0B4J1V0	119 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896		A0A1B0GVG6	124 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	DAPL1	A0PJW8	107 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	FABP12	A6NFH5	140 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	OR5K4	A6NMS3	321 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896		J3QQQ9	107 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	NEMF	O60524	1076 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	SCN2B	O60939	215 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	IGLV3-27	P01718	113 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	TPM3	P06753	285 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	NPPC	P23582	126 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	AGTR1	P30556	359 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	OPRM1	P35372	400 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	HINT1	P49773	126 aa	Predicted RBP	0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	DLX6	P56179	175 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	RPL26	P61254	145 aa	Known RBP	0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	PRB3	Q04118	309 aa	Predicted RBP	0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	SMAGP	Q0VAQ4	97 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	SPATA31B1P	Q5VZV4	182 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	PDPK2P	Q6A1A2	396 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	CCDC112	Q8NEF3	446 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	OR51H1	Q8NH63	302 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	CYGB	Q8WWM9	190 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	SMIM12	Q96EX1	92 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	RBP7	Q96R05	134 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	GNB1L	Q9BYB4	327 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	METTL9	Q9H1A3	318 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	MED28	Q9H204	178 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	ZNHIT6	Q9NWK9	470 aa	Known RBP	0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	C1orf109	Q9NX04	203 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	HHLA2	Q9UM44	414 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	RPL26L1	Q9UNX3	145 aa	Known RBP	0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	PCDH15	Q96QU1	1955 aa		0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	DENND4B	O75064	1496 aa	Predicted RBP	0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	AHNAK	Q09666	5890 aa	Known RBP	0.92	□□□□□ -2.26
PTPN4-212	ENST00000488896	UBFD1	O14562	309 aa	Known RBP	0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	SYNGR1	O43759	233 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	NAPSA	O96009	420 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	HBZ	P02008	142 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	UGT2B7	P16662	529 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	CD40LG	P29965	261 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	HSPA9	P38646	679 aa	Known RBP	0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	CLDN12	P56749	244 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	UBE2G2	P60604	165 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896		Q6ZTI0	123 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	ATP5L2	Q7Z4Y8	100 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	PACRGL	Q8N7B6	248 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	LFNG	Q8NES3	379 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	OR5AK3P	Q8NH89	298 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	MRPS24	Q96EL2	167 aa	Known RBP	0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	OR51B6	Q9H340	312 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	SNX10	Q9Y5X0	201 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	WDR90	Q96KV7	1748 aa		0.91	□□□□□ -2.26
PTPN4-212	ENST00000488896	MYH11	P35749	1972 aa		0.9	□□□□□ -2.26
PTPN4-212	ENST00000488896	C1orf232	A0A0U1RR37	186 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	GRIFIN	A4D1Z8	144 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	TMEM235	A6NFC5	223 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	GOLGA6L10	A6NI86	522 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	GOLGA8R	I6L899	631 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	UBE2L6	O14933	153 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	ATP8B1	O43520	1251 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	CD7	P09564	240 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	ZNF728	P0DKX0	622 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	ATP6V0C	P27449	155 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	RPL14	P50914	215 aa	Known RBP	0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	STC1	P52823	247 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	HERVK_113	P63121	156 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	SLAMF1	Q13291	335 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	TMEM31	Q5JXX7	168 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	FAM45BP	Q6NSW5	357 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	RIBC1	Q8N443	379 aa	Predicted RBP	0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	CNEP1R1	Q8N9A8	125 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	DDI1	Q8WTU0	396 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	MRO	Q9BYG7	248 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	SLC2A9	Q9NRM0	540 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	UBQLN4	Q9NRR5	601 aa		0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	LRPPRC	P42704	1394 aa	Known RBP	0.9	□□□□□ -2.27
PTPN4-212	ENST00000488896	NUP153	P49790	1475 aa	Known RBP	0.9	□□□□□ -2.27

Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms