RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 UBR1Q8IWV7 1749 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 TRPM3Q9HCF6 1732 aaPredicted RBP2.14□□□□□ -2.07
USP48-209ENST00000487880 MYO16Q9Y6X6 1858 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 SIPA1L3O60292 1781 aaPredicted RBP2.14□□□□□ -2.07
USP48-209ENST00000487880 ANKRD36CQ5JPF3 1778 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 BCORQ6W2J9 1755 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 A0A1W2PRG6 482 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 PQLC2LA1A4F0 135 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 TVP23AA6NH52 213 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 CLDN24A6NM45 220 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 LEUTXA8MZ59 168 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 ATP6V1G2-DDX39BF2Z307 99 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 C3orf84H3BNL1 204 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 PRMT5O14744 637 aaPredicted RBP2.14□□□□□ -2.07
USP48-209ENST00000487880 RGS5O15539 181 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 COX7A2P2O60397 106 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 PSIP1O75475 530 aaKnown RBP2.14□□□□□ -2.07
USP48-209ENST00000487880 APOC1P02654 83 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 C1QBP02746 253 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 RLN2P04090 185 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 IL7P13232 177 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 ZNF3P17036 446 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 CXCR4P61073 352 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 VBP1P61758 197 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 STX5Q13190 355 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 TMEM241Q24JQ0 296 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 TMEM215Q68D42 235 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 XAF1Q6GPH4 301 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 ELP2Q6IA86 826 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 FAM45BPQ6NSW5 357 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 DCUN1D2Q6PH85 259 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 OR5H6Q8NGV6 325 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 TEX47Q8TBZ9 253 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 LRRC20Q8TCA0 184 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 FAM45AQ8TCE6 357 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 ROPN1LQ96C74 230 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 CCDC124Q96CT7 223 aaKnown RBP2.14□□□□□ -2.07
USP48-209ENST00000487880 ARL5BQ96KC2 179 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 YPEL4Q96NS1 127 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 PAQR5Q9NXK6 330 aaPredicted RBP2.14□□□□□ -2.07
USP48-209ENST00000487880 GLTPQ9NZD2 209 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 PRELID3BQ9Y3B1 194 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 HSPE1-MOB4S4R3N1 261 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 V9GYY9 64 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 NRCAMQ92823 1304 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 DOCK2Q92608 1830 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 SDHAF1A6NFY7 115 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 BBIP1A8MTZ0 92 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 A8MWP4 228 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 F5H5P2 479 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 K7EN84 100 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 K7ERS5 55 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 UPK2O00526 184 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 FFAR1O14842 300 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 PROSCO94903 275 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 VAPBO95292 243 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 OTCP00480 354 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 IGKV1D-33P01593 117 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 IGKV1-33P01594 117 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 C1QAP02745 245 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 CGB3P0DN86 165 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 CGB7P0DN87 165 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 PSKH1P11801 424 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 CRHBPP24387 322 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 EVI2BP34910 448 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 RPL22P35268 128 aaKnown RBP2.13□□□□□ -2.07
USP48-209ENST00000487880 ARR3P36575 388 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 MAGEA6P43360 314 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 OR2B6P58173 313 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 MYL6P60660 151 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 GRK1Q15835 563 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 Q3ZCU0 254 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 LGALSLQ3ZCW2 172 aaPredicted RBP2.13□□□□□ -2.07
USP48-209ENST00000487880 COQ5Q5HYK3 327 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 CLLU1Q5K131 121 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 LCN8Q6JVE9 175 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 COPS6Q7L5N1 327 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 LYPD6Q86Y78 171 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 STX12Q86Y82 276 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 STX19Q8N4C7 294 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 PHOSPHO2Q8TCD6 241 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 DYNC2LI1Q8TCX1 351 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 C1orf54Q8WWF1 131 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 SLC7A6Q92536 515 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 GTF2H4Q92759 462 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 HYLS1Q96M11 299 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 HOPXQ9BPY8 73 aaPredicted RBP2.13□□□□□ -2.07
USP48-209ENST00000487880 SLC19A3Q9BZV2 496 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 IFT46Q9NQC8 304 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 SDHAF3Q9NRP4 125 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 DMAC2Q9NW81 257 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 RBM12B-AS1Q9P1G2 102 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 CD300AQ9UGN4 299 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 NDUFAF1Q9Y375 327 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 DUOX1Q9NRD9 1551 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 RGPD8O14715 1765 aaPredicted RBP2.13□□□□□ -2.07
USP48-209ENST00000487880 RGPD5Q99666 1765 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 MYH3P11055 1940 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 AKAP11Q9UKA4 1901 aa2.13□□□□□ -2.07
USP48-209ENST00000487880 C5P01031 1676 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms