RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PIK3IP1Q96FE7 263 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 BTF3L4Q96K17 158 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 QKIQ96PU8 341 aaKnown RBP eCLIP1.96□□□□□ -2.1
VPS41-213ENST00000485955 SIGMAR1Q99720 223 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 CMSS1Q9BQ75 279 aaKnown RBP1.96□□□□□ -2.1
VPS41-213ENST00000485955 SULT4A1Q9BR01 284 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 MED18Q9BUE0 208 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 TMED9Q9BVK6 235 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 ARV1Q9H2C2 271 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 IFI27L2Q9H2X8 130 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 RNF167Q9H6Y7 350 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 KCNJ16Q9NPI9 418 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 KCNIP1Q9NZI2 227 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 GSKIPQ9P0R6 139 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 ANXA10Q9UJ72 324 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 SLC35A3Q9Y2D2 325 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 UBIAD1Q9Y5Z9 338 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 SLC22A7Q9Y694 548 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 TMEM56-RWDD3S4R434 201 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 COL27A1Q8IZC6 1860 aaPredicted RBP1.96□□□□□ -2.1
VPS41-213ENST00000485955 PCNX1Q96RV3 2341 aa1.96□□□□□ -2.1
VPS41-213ENST00000485955 A0A0G2JMP0 313 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 METTL15A6NJ78 407 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 ZNF98A6NK75 572 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 FAM159BA6NKW6 160 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 RFPL4AA6NLU0 287 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 ZNF726A6NNF4 738 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 COLCA2A8K830 154 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 LINC00587B1AMM8 73 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 RFPL4AL1F8VTS6 287 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 LINC01619G3V211 115 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 GPR31O00270 319 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 MFNGO00587 321 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 TCAPO15273 167 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 ANGPTL7O43827 346 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 RP2O75695 350 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 UPK1BO75841 260 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 ATG12O94817 140 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 IGKV1D-16P01601 117 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 APOC1P02654 83 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 IGKV5-2P06315 115 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 SLC35G6P0C7Q6 338 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 CYBAP13498 195 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 GGT1P19440 569 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 AK4P27144 223 aaPredicted RBP1.95□□□□□ -2.1
VPS41-213ENST00000485955 PSMB9P28065 219 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 VDAC2P45880 294 aaPredicted RBP1.95□□□□□ -2.1
VPS41-213ENST00000485955 GPR6P46095 362 aaPredicted RBP1.95□□□□□ -2.1
VPS41-213ENST00000485955 VSX2P58304 361 aaPredicted RBP1.95□□□□□ -2.1
VPS41-213ENST00000485955 MTPNP58546 118 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 SNAP25P60880 206 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 NAA20P61599 178 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 ESRRGP62508 458 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 GNG3P63215 75 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 SLC7A9P82251 487 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 BAXQ07812 192 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 IRF4Q15306 451 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 ABCA11PQ4W5N1 156 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 TRMT12Q53H54 448 aaKnown RBP1.95□□□□□ -2.1
VPS41-213ENST00000485955 C1orf195Q5TG92 126 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 KCTD16Q68DU8 428 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 CNIH2Q6PI25 160 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 C5orf46Q6UWT4 87 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 Q6ZN92 141 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 FAM183BPQ6ZVS7 135 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 GALNT10Q86SR1 603 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 SMIM20Q8N5G0 67 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 UBL4BQ8N7F7 174 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 ZFP41Q8N8Y5 198 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 OR4M2Q8NGB6 313 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 OR1L8Q8NGR8 309 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 Q8WTZ3 238 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 FRZBQ92765 325 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 TMEM230Q96A57 120 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 C12orf43Q96C57 262 aaKnown RBP1.95□□□□□ -2.1
VPS41-213ENST00000485955 PPCDCQ96CD2 204 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 HAUS1Q96CS2 278 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 SMIM12Q96EX1 92 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 SPIN2AQ99865 258 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 SPIN2BQ9BPZ2 258 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 SEC22CQ9BRL7 303 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 TAPBPLQ9BX59 468 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 MIXL1Q9H2W2 232 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 FBXL15Q9H469 300 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 METTL17Q9H7H0 456 aaPredicted RBP1.95□□□□□ -2.1
VPS41-213ENST00000485955 NMNAT1Q9HAN9 279 aaPredicted RBP1.95□□□□□ -2.1
VPS41-213ENST00000485955 TMEM138Q9NPI0 162 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 RBM22Q9NW64 420 aaKnown RBP eCLIP1.95□□□□□ -2.1
VPS41-213ENST00000485955 DDIT4Q9NX09 232 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 CALYQ9NYX4 217 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 ST3GAL6Q9Y274 331 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.95□□□□□ -2.1
VPS41-213ENST00000485955 LSM5Q9Y4Y9 91 aaKnown RBP1.95□□□□□ -2.1
VPS41-213ENST00000485955 NUBP2Q9Y5Y2 271 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 UTP20O75691 2785 aaKnown RBP1.95□□□□□ -2.1
VPS41-213ENST00000485955 PCLOQ9Y6V0 5065 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 PTPRQQ9UMZ3 2332 aa1.95□□□□□ -2.1
VPS41-213ENST00000485955 ATMQ13315 3056 aa1.94□□□□□ -2.1
VPS41-213ENST00000485955 MTORP42345 2549 aa1.94□□□□□ -2.1
VPS41-213ENST00000485955 ASXL3Q9C0F0 2248 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms