RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 PAGE4O60829 102 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 CHRNA7P36544 502 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 ZNF705AQ6ZN79 300 aaPredicted RBP11.26□□□□□ -0.61
USP40-214ENST00000483519 COLCA1Q6ZS62 124 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 SLC25A45Q8N413 288 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 WFIKKN1Q96NZ8 548 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 FGF23Q9GZV9 251 aaPredicted RBP11.26□□□□□ -0.61
USP40-214ENST00000483519 GPR35Q9HC97 309 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 PPP1R3CQ9UQK1 317 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 CBY1Q9Y3M2 126 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 RBM7Q9Y580 266 aaKnown RBP11.26□□□□□ -0.61
USP40-214ENST00000483519 PXMP4Q9Y6I8 212 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 MLNRO43193 412 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 SOX15O60248 233 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 UBE2NP61088 152 aaKnown RBP11.25□□□□□ -0.61
USP40-214ENST00000483519 PCOLCEQ15113 449 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 FFAR4Q5NUL3 377 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 MRPL21Q7Z2W9 205 aaKnown RBP11.25□□□□□ -0.61
USP40-214ENST00000483519 GATAD1Q8WUU5 269 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 TBX15Q96SF7 602 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 TMEM208Q9BTX3 173 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 PROK2Q9HC23 129 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 KCNS2Q9ULS6 477 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 MSRB2Q9Y3D2 182 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 C11orf94C9JXX5 98 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 HS3ST1O14792 307 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 HPRT1P00492 218 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 SSR4P51571 173 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 LPAL2Q16609 132 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 TMEM144Q7Z5S9 345 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 OR5T1Q8NG75 326 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 KCNE4Q8WWG9 221 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 OR1A1Q9P1Q5 309 aa11.25□□□□□ -0.61
USP40-214ENST00000483519 TNRC6BQ9UPQ9 1833 aaKnown RBP11.25□□□□□ -0.61
USP40-214ENST00000483519 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.24□□□□□ -0.61
USP40-214ENST00000483519 PDE6DO43924 150 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 IGLV2-14P01704 120 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 CELA2AP08217 269 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 MPLP40238 635 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 ZNF585BQ52M93 769 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 LINC01551Q86U37 167 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 ZNF709Q8N972 641 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 CPEB3Q8NE35 698 aaKnown RBP11.24□□□□□ -0.61
USP40-214ENST00000483519 RDH5Q92781 318 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 IL17BQ9UHF5 180 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 MUC6Q6W4X9 2439 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 RNF212BA8MTL3 300 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 TMPRSS2O15393 492 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 FOXL1Q12952 345 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 MOB1BQ7L9L4 216 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 TMEM256Q8N2U0 113 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 CMTM2Q8TAZ6 248 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 SGCZQ96LD1 299 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 ARRDC1-AS1Q9H2J1 176 aa11.24□□□□□ -0.61
USP40-214ENST00000483519 LILRA1O75019 489 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 LINC00614P0C842 121 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 RANP62826 216 aaKnown RBP11.23□□□□□ -0.61
USP40-214ENST00000483519 NHLH1Q02575 133 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 CST9LP1Q5W188 147 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 MRPL14Q6P1L8 145 aaKnown RBP11.23□□□□□ -0.61
USP40-214ENST00000483519 OR5A2Q8NGI9 324 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 C20orf144Q9BQM9 153 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 LOC102723996A0A087X1L8 192 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 TRAV24A0A0B4J272 114 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 IFNL4K9M1U5 179 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 SYNGR1O43759 233 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 SERPINA7P05543 415 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 CCNOP22674 350 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 GCH1P30793 250 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 COTL1Q14019 142 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 MSMO1Q15800 293 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 NRN1LQ496H8 165 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 SLC23A3Q6PIS1 610 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 SDSLQ96GA7 329 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 HSPB7Q9UBY9 170 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 SDK1Q7Z5N4 2213 aa11.23□□□□□ -0.61
USP40-214ENST00000483519 C1QTNF9BB2RNN3 333 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 C17orf112F2Z3M2 114 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 CXCL13O43927 109 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 SYNGR4O95473 234 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 CFIP05156 583 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 WNT5AP41221 380 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 TPPP2P59282 170 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 PAFAH1B2P68402 229 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 TMEM183BQ1AE95 376 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 TOMM20LQ6UXN7 152 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 FGFRL1Q8N441 504 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 OR10P1Q8NGE3 313 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 MIEN1Q9BRT3 115 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 SH2D2AQ9NP31 389 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 PARD6AQ9NPB6 346 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 TMEM106BQ9NUM4 274 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 IGHV1-45A0A0A0MS14 117 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 WDR1O75083 606 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 TNFSF13O75888 250 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 SRD5A2P31213 254 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 SOX8P57073 446 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 B3GALT5-AS1P59052 145 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 PMP22Q01453 160 aa11.22□□□□□ -0.61
USP40-214ENST00000483519 PLA2G2CQ5R387 149 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms