RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 TMEM133Q9H2Q1 129 aa6.76□□□□□ -1.33
USP54-212ENST00000480210 Q9N2K0 584 aa6.76□□□□□ -1.33
USP54-212ENST00000480210 ZFP57Q9NU63 452 aa6.76□□□□□ -1.33
USP54-212ENST00000480210 AK3Q9UIJ7 227 aa6.76□□□□□ -1.33
USP54-212ENST00000480210 TBL2Q9Y4P3 447 aaKnown RBP6.76□□□□□ -1.33
USP54-212ENST00000480210 DMRT1Q9Y5R6 373 aa6.76□□□□□ -1.33
USP54-212ENST00000480210 TRAV6A0A075B6T7 132 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 C1orf196B1AJZ1 125 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 TRDCB7Z8K6 153 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 INAFM1C9JVW0 142 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 C15orf65H3BRN8 121 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 ITGB1BP1O14713 200 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 YPEL1O60688 119 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 ATG12O94817 140 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 MPC2O95563 127 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 FBP1P09467 338 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 RPA2P15927 270 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 CDK2P24941 298 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 PRSS3P35030 304 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 RPL35P42766 123 aaKnown RBP6.75□□□□□ -1.33
USP54-212ENST00000480210 PLA2G7Q13093 441 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 SMCO1Q147U7 214 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 MINOS1Q5TGZ0 78 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 GSG1LQ6UXU4 331 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 C1orf229Q6ZS94 237 aaPredicted RBP6.75□□□□□ -1.33
USP54-212ENST00000480210 TCF23Q7RTU1 214 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 ABHD12Q8N2K0 398 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 LINC00311Q8N616 119 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 DTX3Q8N9I9 347 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 BEND2Q8NDZ0 799 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 OR11H7Q8NGC8 314 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 OR4A4PQ8NGN8 299 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 OR9G1Q8NH87 305 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 CCDC107Q8WV48 283 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 LHX4Q969G2 390 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 MALSU1Q96EH3 234 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 KIRREL1Q96J84 757 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 YPEL2Q96QA6 119 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 JMJD8Q96S16 334 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 SUCNR1Q9BXA5 334 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 TOLLIPQ9H0E2 274 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 PRDM13Q9H4Q3 707 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 AUNIPQ9H7T9 357 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 TAF9BQ9HBM6 251 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 ZNF286AQ9HBT8 521 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 SIRT7Q9NRC8 400 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 NUDT15Q9NV35 164 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 TAS2R8Q9NYW2 309 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 ZNF581Q9P0T4 197 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 JPT1Q9UK76 154 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 AMMECR1Q9Y4X0 333 aaPredicted RBP6.75□□□□□ -1.33
USP54-212ENST00000480210 MINOS1-NBL1R4GNA1 71 aa6.75□□□□□ -1.33
USP54-212ENST00000480210 SONP18583 2426 aaKnown RBP6.75□□□□□ -1.33
USP54-212ENST00000480210 IGHV2-26A0A0B4J1V2 119 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 TRAV40A0A0B4J280 105 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 OOSP1A8MZH6 123 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 DISC1C4P0D8 188 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 C12orf77C9JDV5 145 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 RNASEK-C17orf49H0YIS7 233 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 NPFFO15130 113 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 HPGDSO60760 199 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 HBZP02008 142 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 LPLP06858 475 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 FCGR3AP08637 254 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 HOXB4P17483 251 aaPredicted RBP6.74□□□□□ -1.33
USP54-212ENST00000480210 RCC1P18754 421 aaPredicted RBP6.74□□□□□ -1.33
USP54-212ENST00000480210 ELK1P19419 428 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 EPHA1P21709 976 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 ZBTB25P24278 435 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 IL3RAP26951 378 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 CEACAM3P40198 252 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 TAS2R20P59543 309 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 HLA-DRB3P79483 266 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 DEFA6Q01524 100 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 SSBP1Q04837 148 aaKnown RBP6.74□□□□□ -1.33
USP54-212ENST00000480210 HNF4GQ14541 408 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 ZNF345Q14585 488 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 ZNF124Q15973 351 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 KLF17Q5JT82 389 aaPredicted RBP6.74□□□□□ -1.33
USP54-212ENST00000480210 ZNF626Q68DY1 528 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 LPCAT3Q6P1A2 487 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 RBMS3Q6XE24 437 aaKnown RBP6.74□□□□□ -1.33
USP54-212ENST00000480210 PNKDQ8N490 385 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 C15orf54Q8N8G6 183 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 BEST4Q8NFU0 473 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 ZNF418Q8TF45 676 aaPredicted RBP6.74□□□□□ -1.33
USP54-212ENST00000480210 EDARADDQ8WWZ3 215 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 DYRK2Q92630 601 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 TSNAXQ99598 290 aaKnown RBP6.74□□□□□ -1.33
USP54-212ENST00000480210 MEGF9Q9H1U4 602 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 OR2S2Q9NQN1 319 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 GFOD1Q9NXC2 390 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 METTL1Q9UBP6 276 aaKnown RBP6.74□□□□□ -1.33
USP54-212ENST00000480210 FAM96BQ9Y3D0 163 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 POMT1Q9Y6A1 747 aa6.74□□□□□ -1.33
USP54-212ENST00000480210 ZANQ9Y493 2812 aa6.73□□□□□ -1.33
USP54-212ENST00000480210 CELSR1Q9NYQ6 3014 aa6.73□□□□□ -1.33
USP54-212ENST00000480210 TMEM235A6NFC5 223 aa6.73□□□□□ -1.33
USP54-212ENST00000480210 ODF3BA8MYP8 253 aa6.73□□□□□ -1.33
USP54-212ENST00000480210 J3QR06 171 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms