RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	ZNF439	Q8NDP4	499 aa		12	□□□□□ -0.49
VARS-223	ENST00000474643	MAFIP	Q8WZ33	124 aa		12	□□□□□ -0.49
VARS-223	ENST00000474643	DCUN1D5	Q9BTE7	237 aa		12	□□□□□ -0.49
VARS-223	ENST00000474643	KCNK7	Q9Y2U2	307 aa		12	□□□□□ -0.49
VARS-223	ENST00000474643	IGHV3-72	A0A0B4J1Y9	119 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	BET1	O15155	118 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	TXNL1	O43396	289 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	AMY1A	P04745	511 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	AMY2A	P04746	511 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	PTBP1	P26599	531 aa	Known RBP eCLIP	11.99	□□□□□ -0.49
VARS-223	ENST00000474643	S100A5	P33763	92 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	CEACAM6	P40199	344 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	PITPNA	Q00169	270 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	PNLIPRP3	Q17RR3	467 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	CNPY1	Q3B7I2	92 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	C10orf99	Q6UWK7	81 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	C5orf56	Q8N8D9	126 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	OR4A4P	Q8NGN8	299 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	11.99	□□□□□ -0.49
VARS-223	ENST00000474643	EDARADD	Q8WWZ3	215 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	GON7	Q9BXV9	100 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	ZNF230	Q9UIE0	474 aa	Predicted RBP	11.99	□□□□□ -0.49
VARS-223	ENST00000474643	NOTCH3	Q9UM47	2321 aa		11.99	□□□□□ -0.49
VARS-223	ENST00000474643	TRAV18	A0A075B6X5	111 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	TMEM235	A6NFC5	223 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	ST8SIA5	O15466	376 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	RGS5	O15539	181 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	FABP7	O15540	132 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	HPGDS	O60760	199 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	RAB25	P57735	213 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	SRSF7	Q16629	238 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
VARS-223	ENST00000474643	TCTEX1D4	Q5JR98	221 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	HACD4	Q5VWC8	232 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	OR2T10	Q8NGZ9	312 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	NUDCD2	Q8WVJ2	157 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	NOL4L	Q96MY1	436 aa	Predicted RBP	11.98	□□□□□ -0.49
VARS-223	ENST00000474643	RASL11B	Q9BPW5	248 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	GINS4	Q9BRT9	223 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	ST6GALNAC5	Q9BVH7	336 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	C6orf62	Q9GZU0	229 aa	Predicted RBP	11.98	□□□□□ -0.49
VARS-223	ENST00000474643	OR1A1	Q9P1Q5	309 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	LINC00527	Q9UJ94	153 aa		11.98	□□□□□ -0.49
VARS-223	ENST00000474643	ELF5	Q9UKW6	265 aa	Predicted RBP	11.98	□□□□□ -0.49
VARS-223	ENST00000474643	FAM90A9P	A6NNJ1	464 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	CTDSP2	O14595	271 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	GSTT2	P0CG29	244 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	GSTT2B	P0CG30	244 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	ELK1	P19419	428 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	ETV6	P41212	452 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	MRPS10	P82664	201 aa	Known RBP	11.97	□□□□□ -0.49
VARS-223	ENST00000474643	DEFB121	Q5J5C9	76 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	LY6G6F	Q5SQ64	297 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	COMMD1	Q8N668	190 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	KLHL30-AS1	Q8NEE0	82 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	WFDC9	Q8NEX5	89 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	OR10J5	Q8NHC4	309 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	S1PR3	Q99500	378 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	MIXL1	Q9H2W2	232 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	PIPOX	Q9P0Z9	390 aa		11.97	□□□□□ -0.49
VARS-223	ENST00000474643	RBM7	Q9Y580	266 aa	Known RBP	11.97	□□□□□ -0.49
VARS-223	ENST00000474643	AP4M1	O00189	453 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	SULT1C2	O00338	296 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	RAB29	O14966	203 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	LANCL1	O43813	399 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	EIF4E	P06730	217 aa	Known RBP	11.96	□□□□□ -0.49
VARS-223	ENST00000474643	DTYMK	P23919	212 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	OR3A3	P47888	321 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	ZNF137P	P52743	207 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	RPL23A	P62750	156 aa	Known RBP	11.96	□□□□□ -0.49
VARS-223	ENST00000474643	ZNF260	Q3ZCT1	412 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	TMEM69	Q5SWH9	247 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	LAX1	Q8IWV1	398 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	OR6Q1	Q8NGQ2	317 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	ST6GALNAC6	Q969X2	333 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	SOST	Q9BQB4	213 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	MCRIP2	Q9BUT9	160 aa	Known RBP	11.96	□□□□□ -0.49
VARS-223	ENST00000474643	ZFP57	Q9NU63	452 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	RDH8	Q9NYR8	311 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	ZNF221	Q9UK13	617 aa		11.96	□□□□□ -0.49
VARS-223	ENST00000474643	SAA2-SAA4	A0A096LPE2	208 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	FAM25A	B3EWG3	89 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	FAM25C	B3EWG5	89 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	FAM25G	B3EWG6	89 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	CTDSPL	O15194	276 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	MOS	P00540	346 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	SAA2	P0DJI9	122 aa	Predicted RBP	11.95	□□□□□ -0.5
VARS-223	ENST00000474643	CD1B	P29016	333 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	SLC6A1	P30531	599 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	TNFSF8	P32971	234 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	CBX5	P45973	191 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	IGSF11	Q5DX21	431 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	CXorf66	Q5JRM2	361 aa	Predicted RBP	11.95	□□□□□ -0.5
VARS-223	ENST00000474643	TEX38	Q6PEX7	206 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643		Q6ZS49	121 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	C8orf86	Q6ZUL3	223 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	CCDC190	Q86UF4	302 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	DIRAS2	Q96HU8	199 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	ABHD14B	Q96IU4	210 aa		11.95	□□□□□ -0.5
VARS-223	ENST00000474643	EAF1	Q96JC9	268 aa	Predicted RBP	11.95	□□□□□ -0.5
VARS-223	ENST00000474643	MRPL20	Q9BYC9	149 aa	Known RBP	11.95	□□□□□ -0.5

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