RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 RBFOX3A6NFN3 312 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 ZNF705FA8MVS1 300 aaPredicted RBP2.89□□□□□ -1.95
UBR3-208ENST00000474426 CD5LO43866 347 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 TBL1XO60907 577 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 PMS2P2O95744 297 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 PLAUP00749 431 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 GPX1P07203 203 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 ZNF705DP0CH99 300 aaPredicted RBP2.89□□□□□ -1.95
UBR3-208ENST00000474426 ZNF705BP0CI00 300 aaPredicted RBP2.89□□□□□ -1.95
UBR3-208ENST00000474426 FGF6P10767 208 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 CFPP27918 469 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 PSMB9P28065 219 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 SRP14P37108 136 aaKnown RBP2.89□□□□□ -1.95
UBR3-208ENST00000474426 RPS4XP62701 263 aaKnown RBP2.89□□□□□ -1.95
UBR3-208ENST00000474426 CX3CL1P78423 397 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 ANKRD34AQ69YU3 496 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 TMEM14EPQ6UXP3 125 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 STAC2Q6ZMT1 411 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 PQLC2Q6ZP29 291 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 TEX29Q8N6K0 151 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 OR51T1Q8NGJ9 327 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 OSR1Q8TAX0 266 aaPredicted RBP2.89□□□□□ -1.95
UBR3-208ENST00000474426 SSMEM1Q8WWF3 244 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 PLEKHB2Q96CS7 222 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 ADAT3Q96EY9 351 aaPredicted RBP2.89□□□□□ -1.95
UBR3-208ENST00000474426 AMELYQ99218 206 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 ASIC5Q9NY37 505 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 PROCRQ9UNN8 238 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 ATG2BQ96BY7 2078 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 USP54Q70EL1 1684 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 XRN1Q8IZH2 1706 aaKnown RBP2.89□□□□□ -1.95
UBR3-208ENST00000474426 RALGAPA1Q6GYQ0 2036 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 ANKRD31Q8N7Z5 1873 aa2.89□□□□□ -1.95
UBR3-208ENST00000474426 FAM236AA0A1B0GUQ0 79 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 FAM236BA0A1B0GV22 79 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 CD300LBA8K4G0 201 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 TMEM150CB9EJG8 249 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 CD38P28907 300 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 GUCA1AP43080 201 aaPredicted RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 VDAC2P45880 294 aaPredicted RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 NUDT2P50583 147 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 ISL1P61371 349 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 TRIM40Q6P9F5 258 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 THAP8Q8NA92 274 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 OR52R1Q8NGF1 315 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 WDR13Q9H1Z4 485 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 ISG20L2Q9H9L3 353 aaKnown RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 UBE2TQ9NPD8 197 aaPredicted RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 SCN5AQ14524 2016 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 TRPM7Q96QT4 1865 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 CDC42EP2O14613 210 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 ZFAND5O76080 213 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 SFT2D2O95562 160 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 NTN1O95631 604 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 FCGR3AP08637 254 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 DLX1P56177 255 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 LCN6P62502 163 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 UNC119Q13432 240 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 PNOCQ13519 176 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 CD226Q15762 336 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 SP6Q3SY56 376 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 C19orf48Q6RUI8 117 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 SBSNQ6UWP8 590 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 CMC1Q7Z7K0 106 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 CMTM4Q8IZR5 234 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 KCNRGQ8N5I3 272 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 OR11H6Q8NGC7 330 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 ACY3Q96HD9 319 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 Q96M66 194 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 S1PR3Q99500 378 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 MRPL32Q9BYC8 188 aaKnown RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 IL36AQ9UHA7 158 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 SCML2Q9UQR0 700 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 POLR1DQ9Y2S0 133 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 NUP188Q5SRE5 1749 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 LRRC9Q6ZRR7 1453 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 C3P01024 1663 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 TRBV20-1A0A075B6N2 111 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 A0A087WWC5 75 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 ZAR1LA6NP61 321 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 J3QQQ9 107 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 ARPC2O15144 300 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 RER1O15258 196 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 CRXO43186 299 aaPredicted RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 PSPNO60542 156 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 LSM8O95777 96 aaKnown RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 MRPL3P09001 348 aaKnown RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 KIR2DS2P43631 304 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 TPPP2P59282 170 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 FOXF2Q12947 444 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 IHHQ14623 411 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 DUSP5Q16690 384 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 CEACAM16Q2WEN9 425 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 ZNF57Q68EA5 555 aaPredicted RBP2.88□□□□□ -1.95
UBR3-208ENST00000474426 LHFPL1Q86WI0 220 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 ZNF615Q8N8J6 731 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 COX18Q8N8Q8 333 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 PPTC7Q8NI37 304 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 TM2D1Q9BX74 207 aa2.88□□□□□ -1.95
UBR3-208ENST00000474426 DEPPQ9NTK1 212 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms