RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 CALRP27797 417 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 ECI1P42126 302 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 VEGFCP49767 419 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 CX3CL1P78423 397 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 PLA2G7Q13093 441 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 TRAM1Q15629 374 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 ZNF260Q3ZCT1 412 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 PLAC9Q5JTB6 97 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 ZNF660Q6AZW8 331 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 CASTOR1Q8WTX7 329 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 EDARADDQ8WWZ3 215 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 PECRQ9BY49 303 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 ALX4Q9H161 411 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 Q9N2K0 584 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 MGAT4AQ9UM21 535 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 GAB2Q9UQC2 676 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 WASHC3Q9Y3C0 194 aa14.57□□□□□ -0.08
CCDC88B-206ENST00000473405 LDLRAD4O15165 306 aa14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 MC5RP33032 325 aa14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 CEACAM6P40199 344 aa14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 MAP2K4P45985 399 aa14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 PRSS48Q7RTY5 328 aa14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 DRAXINQ8NBI3 349 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 PTX4Q96A99 478 aa14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 FAM3DQ96BQ1 224 aa14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 MGLLQ99685 303 aa14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 GHITMQ9H3K2 345 aa14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 FOXA2Q9Y261 457 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 HUWE1Q7Z6Z7 4374 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-206ENST00000473405 A0A1W2PN81 502 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 H7C2Y5 167 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 HSPA12AO43301 675 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 RBBP9O75884 186 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 IGKV1-16P04430 117 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 CHRNA7P36544 502 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 LINC00205P59089 165 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 ZNF383Q8NA42 475 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 CCDC90BQ9GZT6 254 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 RNF150Q9ULK6 438 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 ZNF256Q9Y2P7 627 aaPredicted RBP14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 RRP15Q9Y3B9 282 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 A3GALT2U3KPV4 340 aa14.55□□□□□ -0.08
CCDC88B-206ENST00000473405 GSTP1P09211 210 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 PLGLAQ15195 96 aa14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 C2orf76Q3KRA6 126 aa14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 CD200R1LQ6Q8B3 271 aa14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 TCTEX1D1Q8N7M0 179 aa14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 OR56B1Q8NGI3 324 aa14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 DCUN1D4Q92564 292 aa14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 WWC2-AS2Q96NR7 200 aa14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 CMSS1Q9BQ75 279 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 FAM103A1Q9BTL3 118 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 TPSG1Q9NRR2 321 aa14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 KCNK7Q9Y2U2 307 aa14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 NUBP2Q9Y5Y2 271 aa14.54□□□□□ -0.08
CCDC88B-206ENST00000473405 TMEM272A0A1B0GTI8 110 aa14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 TRDCB7Z8K6 153 aa14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 LGALS1P09382 135 aaKnown RBP14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 INSL3P51460 131 aa14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 PSG5Q15238 335 aa14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 RNF5Q99942 180 aa14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 TOLLIPQ9H0E2 274 aa14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 ACOT13Q9NPJ3 140 aa14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 RDH8Q9NYR8 311 aa14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 METTL1Q9UBP6 276 aaKnown RBP14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 V9GY05 133 aa14.53□□□□□ -0.08
CCDC88B-206ENST00000473405 SHISA3A0PJX4 238 aa14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 OVOL1O14753 267 aa14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 DENRO43583 198 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 NHLRC4P0CG21 123 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 SLURP1P55000 103 aa14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 TBCEQ15813 527 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 SSX1Q16384 188 aa14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 MOGAT2Q3SYC2 334 aa14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 HES5Q5TA89 166 aa14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 PPP1R27Q86WC6 154 aa14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 ABHD5Q8WTS1 349 aa14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 DLX4Q92988 240 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 CLCC1Q96S66 551 aa14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.52□□□□□ -0.09
CCDC88B-206ENST00000473405 IGHV4OR15-8A0A075B7B6 117 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 A0A087WW49 117 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 SPDEFO95238 335 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 CA2P00918 260 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 TFAP2AP05549 437 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 OR10A3P58181 314 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 SSBP2P81877 361 aaPredicted RBP14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 AKIRIN2Q53H80 203 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 ACTBL2Q562R1 376 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 PYHIN1Q6K0P9 492 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 ZNF562Q6V9R5 426 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 ZNF429Q86V71 674 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 PDPNQ86YL7 162 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 ZNF221Q9UK13 617 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 CSMD3Q7Z407 3707 aa14.51□□□□□ -0.09
CCDC88B-206ENST00000473405 LINC01619G3V211 115 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 FCGR3AP08637 254 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 CD3GP09693 182 aa14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 TMEM267Q0VDI3 215 aaPredicted RBP14.5□□□□□ -0.09
CCDC88B-206ENST00000473405 UNQ5815/PRO19632Q6UWF5 114 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms