RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 OR5H14A6NHG9 310 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 VGLL3A8MV65 326 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 OOSP1A8MZH6 123 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 GAPDHP04406 335 aaKnown RBP11.88□□□□□ -0.51
COL9A3-209ENST00000469852 TBPP20226 339 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 SLC9A3R2Q15599 337 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 LY6EQ16553 131 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 GLDNQ6ZMI3 551 aaPredicted RBP11.88□□□□□ -0.51
COL9A3-209ENST00000469852 TMEM17Q86X19 198 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 TGIF2LXQ8IUE1 241 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 DRAXINQ8NBI3 349 aaPredicted RBP11.88□□□□□ -0.51
COL9A3-209ENST00000469852 ZNF418Q8TF45 676 aaPredicted RBP11.88□□□□□ -0.51
COL9A3-209ENST00000469852 SECTM1Q8WVN6 248 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 MRGPRFQ96AM1 343 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 NABP2Q9BQ15 211 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 CCL28Q9NRJ3 127 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 PIPOXQ9P0Z9 390 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 ZNF221Q9UK13 617 aa11.88□□□□□ -0.51
COL9A3-209ENST00000469852 AMY2AP04746 511 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 AKAIN1P0CW23 69 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 CT45A6P0DMU7 189 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 CT45A5P0DMU8 189 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 CT45A7P0DMV0 189 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 IL7P13232 177 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 TSPAN5P62079 268 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 HABP2Q14520 560 aaPredicted RBP11.87□□□□□ -0.51
COL9A3-209ENST00000469852 AADACL3Q5VUY0 350 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 CCBE1Q6UXH8 406 aaPredicted RBP11.87□□□□□ -0.51
COL9A3-209ENST00000469852 RBMS3Q6XE24 437 aaKnown RBP11.87□□□□□ -0.51
COL9A3-209ENST00000469852 MOB3BQ86TA1 216 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 LHFPL1Q86WI0 220 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 TOMM5Q8N4H5 51 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 ZNF645Q8N7E2 425 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 OR6F1Q8NGZ6 308 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 S100ZQ8WXG8 99 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 MOB3AQ96BX8 217 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 GPHA2Q96T91 129 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 CHIAQ9BZP6 476 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 TAS2R8Q9NYW2 309 aa11.87□□□□□ -0.51
COL9A3-209ENST00000469852 FAM90A9PA6NNJ1 464 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 M0R1X1 148 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 DYNLT3P51808 116 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 PPP5CP53041 499 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 HERV-K104P61576 105 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 LSAMPQ13449 338 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 EIF4EBP1Q13541 118 aaPredicted RBP11.86□□□□□ -0.51
COL9A3-209ENST00000469852 AANATQ16613 207 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 CCDC144NLQ6NUI1 221 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 FAM71F2Q6NXP2 309 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 ZNF818PQ6ZRF7 136 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 OR8H3Q8N146 312 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 ARRDC1Q8N5I2 433 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 ZNF383Q8NA42 475 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.86□□□□□ -0.51
COL9A3-209ENST00000469852 SSMEM1Q8WWF3 244 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 S1PR3Q99500 378 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 SLC5A7Q9GZV3 580 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 HRASLSQ9HDD0 168 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 GAB2Q9UQC2 676 aa11.86□□□□□ -0.51
COL9A3-209ENST00000469852 LINC00854A0A1B0GVQ3 168 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 LINC00473A8K010 186 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 TXNL1O43396 289 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 TNFSF12O43508 249 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 TCF21O43680 179 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 IFNA6P05013 189 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 SNRNP70P08621 437 aaKnown RBP11.85□□□□□ -0.51
COL9A3-209ENST00000469852 CD40LGP29965 261 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 GNRHRP30968 328 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 UBA52P62987 128 aaKnown RBP11.85□□□□□ -0.51
COL9A3-209ENST00000469852 ZNF846Q147U1 533 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 MEF2DQ14814 521 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 SCGB2B2Q4G0G5 96 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 TRIQKQ629K1 86 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 ZNF57Q68EA5 555 aaPredicted RBP11.85□□□□□ -0.51
COL9A3-209ENST00000469852 TMEM219Q86XT9 240 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 OR51S1Q8NGJ8 323 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 FAM216AQ8WUB2 273 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 CAPSLQ8WWF8 208 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 TAF15Q92804 592 aaKnown RBP eCLIP11.85□□□□□ -0.51
COL9A3-209ENST00000469852 GHITMQ9H3K2 345 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 ABCB10Q9NRK6 738 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 TCF19Q9Y242 345 aa11.85□□□□□ -0.51
COL9A3-209ENST00000469852 STAB1Q9NY15 2570 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 A6NDX4 124 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 H0YJW9 148 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 CHST1O43916 411 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 IGKV1D-33P01593 117 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 IGKV1-33P01594 117 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 BRS3P32247 399 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 DUTP33316 252 aaKnown RBP11.84□□□□□ -0.51
COL9A3-209ENST00000469852 RPL30P62888 115 aaKnown RBP11.84□□□□□ -0.51
COL9A3-209ENST00000469852 OR13C8Q8NGS7 320 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 RITA1Q96K30 269 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 WDR12Q9GZL7 423 aaKnown RBP11.84□□□□□ -0.51
COL9A3-209ENST00000469852 DPAGT1Q9H3H5 408 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 MCUBQ9NWR8 336 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 VPREB3Q9UKI3 123 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 POMT1Q9Y6A1 747 aa11.84□□□□□ -0.51
COL9A3-209ENST00000469852 DISC1C4P0D8 188 aa11.83□□□□□ -0.52
COL9A3-209ENST00000469852 PLA2G10O15496 165 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms