RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 H7BYZ3 331 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 GGCTO75223 188 aaKnown RBP8.12□□□□□ -1.11
HDAC3-205ENST00000469550 OR7C1O76099 320 aaPredicted RBP8.12□□□□□ -1.11
HDAC3-205ENST00000469550 HRASP01112 189 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 LCATP04180 440 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 F2RP25116 425 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 SRP14P37108 136 aaKnown RBP8.12□□□□□ -1.11
HDAC3-205ENST00000469550 GALR1P47211 349 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 ERVFC1-1P60608 527 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 MEF2BQ02080 365 aaPredicted RBP8.12□□□□□ -1.11
HDAC3-205ENST00000469550 ZNF92Q03936 586 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 RELQ04864 619 aaPredicted RBP8.12□□□□□ -1.11
HDAC3-205ENST00000469550 ACTL10Q5JWF8 245 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 ZNF66Q6ZN08 573 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 SAXO1Q8IYX7 474 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 ZIC4Q8N9L1 334 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 MDS2Q8NDY4 140 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 LSM10Q969L4 123 aaKnown RBP8.12□□□□□ -1.11
HDAC3-205ENST00000469550 GPR146Q96CH1 333 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 R3HDM4Q96D70 268 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 BTF3L4Q96K17 158 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 SMIM7Q9BQ49 75 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 RSG1Q9BU20 258 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 REPIN1Q9BWE0 567 aaKnown RBP8.12□□□□□ -1.11
HDAC3-205ENST00000469550 RIMS4Q9H426 269 aaPredicted RBP8.12□□□□□ -1.11
HDAC3-205ENST00000469550 GAB2Q9UQC2 676 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 LAMP3Q9UQV4 416 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 ZNF835Q9Y2P0 537 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 TIMM9Q9Y5J7 89 aa8.12□□□□□ -1.11
HDAC3-205ENST00000469550 IGKV1D-13A0A0B4J2D9 117 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 TRGV8A0A0C4DH27 118 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 LRP5LA4QPB2 252 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 MAP1LC3B2A6NCE7 125 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 M0R143 59 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 TP53I11O14683 189 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 ZNF737O75373 536 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 HLA-HP01893 362 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 SCTP09683 121 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 IGKV1-13P0DP09 117 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 GRNP28799 593 aaKnown RBP8.11□□□□□ -1.11
HDAC3-205ENST00000469550 APLNRP35414 380 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 RPL23P62829 140 aaKnown RBP8.11□□□□□ -1.11
HDAC3-205ENST00000469550 HBG1P69891 147 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 HBG2P69892 147 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 PAX5Q02548 391 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 ADIRFQ15847 76 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 NAXEQ8NCW5 288 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 RBM14Q96PK6 669 aaKnown RBP8.11□□□□□ -1.11
HDAC3-205ENST00000469550 SF3B5Q9BWJ5 86 aaKnown RBP8.11□□□□□ -1.11
HDAC3-205ENST00000469550 MAP1LC3BQ9GZQ8 125 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 RBKSQ9H477 322 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 VSIRQ9H7M9 311 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 CCL28Q9NRJ3 127 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 ATP23Q9Y6H3 246 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 APCP25054 2843 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 CCL21O00585 134 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 EREGO14944 169 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 DNPH1O43598 174 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 SYNGR2O43760 224 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 GZMHP20718 246 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 LCN2P80188 198 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 HERPUD1Q15011 391 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 KRTCAP3Q53RY4 240 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 ZNF766Q5HY98 468 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 C1orf194Q5T5A4 169 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 PLCXD3Q63HM9 321 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 ZNF774Q6NX45 483 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 SSX7Q7RTT5 188 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 ZNF611Q8N823 705 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 SPSB4Q96A44 273 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 RASL10BQ96S79 203 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 IMMP2LQ96T52 175 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 SNHG12Q9BXW3 62 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 WDR61Q9GZS3 305 aaKnown RBP8.11□□□□□ -1.11
HDAC3-205ENST00000469550 OR6C3Q9NZP0 311 aa8.11□□□□□ -1.11
HDAC3-205ENST00000469550 CHCHD2Q9Y6H1 151 aaPredicted RBP8.11□□□□□ -1.11
HDAC3-205ENST00000469550 TRBV6-6A0A0A6YYG2 114 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 KIR2DL5BA0A0G2JN68 375 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 KIR2DL5BA0A0G2JPC4 375 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 A0A0G2JRQ6 117 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 TMEM210A6NLX4 147 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 M0QZK8 103 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 VENTXO95231 258 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 CD55P08174 381 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 MDKP21741 143 aaPredicted RBP8.1□□□□□ -1.11
HDAC3-205ENST00000469550 FGF8P55075 233 aaPredicted RBP8.1□□□□□ -1.11
HDAC3-205ENST00000469550 CASP6P55212 293 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 FGF12P61328 243 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 TMEM267Q0VDI3 215 aaPredicted RBP8.1□□□□□ -1.11
HDAC3-205ENST00000469550 P2RY6Q15077 328 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 PDCD1Q15116 288 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 CALHM1Q8IU99 346 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 KIR2DL5AQ8N109 375 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 OR2T10Q8NGZ9 312 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 OR51I2Q9H344 312 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 TMEM38BQ9NVV0 291 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 PSENENQ9NZ42 101 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 IGKV1-6A0A0C4DH72 117 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 SERPINE2P07093 398 aa8.1□□□□□ -1.11
HDAC3-205ENST00000469550 COX5BP10606 129 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms