RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 PXDC1Q5TGL8 231 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 DPPA3Q6W0C5 159 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 STX12Q86Y82 276 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 WFDC8Q8IUA0 241 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 ODF3L1Q8IXM7 274 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 PUSL1Q8N0Z8 303 aaKnown RBP6.32□□□□□ -1.4
COL6A3-208ENST00000468792 C8orf31Q8N9H6 132 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 GALNT11Q8NCW6 608 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 C5orf30Q96GV9 206 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 ADTRPQ96IZ2 230 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 LINC00052Q96N35 136 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 WFIKKN1Q96NZ8 548 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 GAFA1Q96PS6 74 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 CIB3Q96Q77 187 aaPredicted RBP6.32□□□□□ -1.4
COL6A3-208ENST00000468792 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.32□□□□□ -1.4
COL6A3-208ENST00000468792 GFOD1Q9NXC2 390 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 CALYQ9NYX4 217 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 KAAG1Q9UBP8 84 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 CACNG5Q9UF02 275 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 NDRG3Q9UGV2 375 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 NBEAQ8NFP9 2946 aa6.32□□□□□ -1.4
COL6A3-208ENST00000468792 USF3Q68DE3 2245 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 SPTA1P02549 2419 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 hADV38S2A0JD32 116 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 BTBD17A6NE02 478 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 FAM24AA6NFZ4 105 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 NKX6-3A6NJ46 265 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 A6NJY4 79 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 TMEM178BH3BS89 294 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 HPRT1P00492 218 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 CD5P06127 495 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 GPR12P47775 334 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 RPL30P62888 115 aaKnown RBP6.31□□□□□ -1.4
COL6A3-208ENST00000468792 TNFRSF9Q07011 255 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 ATP6V1FQ16864 119 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 PRR30Q53SZ7 412 aaPredicted RBP6.31□□□□□ -1.4
COL6A3-208ENST00000468792 SPRNQ5BIV9 151 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 TMEM14EPQ6UXP3 125 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 DMRTC2Q8IXT2 367 aaPredicted RBP6.31□□□□□ -1.4
COL6A3-208ENST00000468792 ZNF295-AS1Q8N0V1 137 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 ZNRF1Q8ND25 227 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 LFNGQ8NES3 379 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 OR5C1Q8NGR4 320 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 OR52E5Q8NH55 327 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 RNASE11Q8TAA1 199 aaKnown RBP6.31□□□□□ -1.4
COL6A3-208ENST00000468792 GPHA2Q96T91 129 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 ATP5SQ99766 215 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 PLA2G2EQ9NZK7 142 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 GNG12Q9UBI6 72 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 RNF150Q9ULK6 438 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 CARHSP1Q9Y2V2 147 aaKnown RBP6.31□□□□□ -1.4
COL6A3-208ENST00000468792 LINC00312Q9Y6C7 94 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 SPTBN4Q9H254 2564 aa6.31□□□□□ -1.4
COL6A3-208ENST00000468792 IGF2RP11717 2491 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PPIAL4EA0A075B759 164 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 IGHV3OR15-7A0A075B7D8 119 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 TRGV8A0A0C4DH27 118 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 E7EQL1 145 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PPIAL4DF5H284 164 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PPIHO43447 177 aaKnown RBP6.3□□□□□ -1.4
COL6A3-208ENST00000468792 SOX15O60248 233 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PROP1O75360 226 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 CD3EP07766 207 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PPIAL4FP0DN26 164 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 CD80P33681 288 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 DVL1P1P54792 670 aaPredicted RBP6.3□□□□□ -1.4
COL6A3-208ENST00000468792 UBE2KP61086 200 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 HBG1P69891 147 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 HBG2P69892 147 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 TAGLNQ01995 201 aaKnown RBP6.3□□□□□ -1.4
COL6A3-208ENST00000468792 TLE1Q04724 770 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 EDDM3AQ14507 147 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 POU2AF1Q16633 256 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 SP5Q6BEB4 398 aaPredicted RBP6.3□□□□□ -1.4
COL6A3-208ENST00000468792 ALKBH2Q6NS38 261 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 FAM71F2Q6NXP2 309 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 CENPVQ7Z7K6 275 aaPredicted RBP6.3□□□□□ -1.4
COL6A3-208ENST00000468792 TPRX1Q8N7U7 411 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 ZNF439Q8NDP4 499 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 BPIFCQ8NFQ6 507 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 ZNF596Q8TC21 504 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 TCTEX1D2Q8WW35 142 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 DDB2Q92466 427 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 BSCL2Q96G97 398 aaPredicted RBP6.3□□□□□ -1.4
COL6A3-208ENST00000468792 TMEM204Q9BSN7 226 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PSMG3Q9BT73 122 aaPredicted RBP6.3□□□□□ -1.4
COL6A3-208ENST00000468792 SEC11CQ9BY50 192 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 MAGT1Q9H0U3 335 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 IFI27L2Q9H2X8 130 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PRORYQ9H606 182 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 SAP30LQ9HAJ7 183 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 IDI2-AS1Q9NZ38 188 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 COQ3Q9NZJ6 369 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 RPUSD1Q9UJJ7 312 aaKnown RBP6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PSG11Q9UQ72 335 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PRELID3BQ9Y3B1 194 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PPIAL4AQ9Y536 164 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 DSCAML1Q8TD84 2053 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 PIEZO1Q92508 2521 aa6.3□□□□□ -1.4
COL6A3-208ENST00000468792 DSCAMO60469 2012 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms