RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 GNG13Q9P2W3 67 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 SLC25A15Q9Y619 301 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 LINC00473A8K010 186 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF727A8MUV8 499 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 C1orf196B1AJZ1 125 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 IFNL4K9M1U5 179 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 ST8SIA5O15466 376 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 HBE1P02100 147 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 HSPB1P04792 205 aaKnown RBP7.47□□□□□ -1.21
SYNE1-217ENST00000466159 CD55P08174 381 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 P0C879 139 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF83P51522 516 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 FGF8P55075 233 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-217ENST00000466159 RAB2AP61019 212 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 RPS23P62266 143 aaKnown RBP7.47□□□□□ -1.21
SYNE1-217ENST00000466159 SNRPEP62304 92 aaKnown RBP7.47□□□□□ -1.21
SYNE1-217ENST00000466159 P2RY6Q15077 328 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 RNF212Q495C1 297 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 SPRNQ5BIV9 151 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 FAM180AQ6UWF9 173 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 LINC00469Q8N7U9 141 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 RAB39BQ96DA2 213 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 WDR61Q9GZS3 305 aaKnown RBP7.47□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF665Q9H7R5 613 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 CLN8Q9UBY8 286 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 HSPB7Q9UBY9 170 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 PSG11Q9UQ72 335 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 UBE2L5PA0A1B0GUS4 154 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 A0A1W2PPE3 182 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 LRRC30A6NM36 301 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 FAM90A26D6RGX4 464 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 PPIHO43447 177 aaKnown RBP7.47□□□□□ -1.21
SYNE1-217ENST00000466159 CEACAM4O75871 244 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 RAB5AP20339 215 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 TUBG1P23258 451 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 PRDX2P32119 198 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 RPS16P62249 146 aaKnown RBP7.47□□□□□ -1.21
SYNE1-217ENST00000466159 SLC38A11Q08AI6 406 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 CATR1Q13166 79 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 Q3ZCU0 254 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 ADAM5Q6NVV9 412 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 TMEM14EPQ6UXP3 125 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF429Q86V71 674 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 ZADH2Q8N4Q0 377 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 LURAP1Q96LR2 239 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 TOLLIPQ9H0E2 274 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 UNKLQ9H9P5 680 aaKnown RBP7.47□□□□□ -1.21
SYNE1-217ENST00000466159 TUBG2Q9NRH3 451 aa7.47□□□□□ -1.21
SYNE1-217ENST00000466159 IGHV3OR15-7A0A075B7D8 119 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 TRAV1-1A0A0B4J248 108 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 LOC102723971A0A1B0GUV8 181 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 MBD3L4A6NDZ8 208 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 MBD3L3A6NE82 208 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 MBD3L5A6NJ08 208 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 ZFP92A6NM28 416 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 C15orf65H3BRN8 121 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 OR2C1O95371 312 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 AGAP20933 346 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 ELLP55199 621 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 MSMO1Q15800 293 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 KHDC3LQ587J8 217 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 SPINK9Q5DT21 86 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 ZNF787Q6DD87 383 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 BEND4Q6ZU67 534 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 MBD3L2Q8NHZ7 208 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 ZDHHC16Q969W1 377 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 RCC1LQ96I51 464 aaKnown RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 AGMATQ9BSE5 352 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 PSMG3Q9BT73 122 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 RP1L1Q8IWN7 2480 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 IGKV1D-17A0A075B6S4 117 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 A0A1B0GWJ7 208 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 ZNF891A8MT65 544 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 M0R1B8 84 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 ZG16O60844 167 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 ZNF737O75373 536 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 TAGLN2P37802 199 aaKnown RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 OR2B8PP59922 312 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 DLK1P80370 383 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 ZNF474Q6S9Z5 364 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 ZNF561Q8N587 486 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 TAF15Q92804 592 aaKnown RBP eCLIP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 S100PBPQ96BU1 408 aa7.46□□□□□ -1.22
SYNE1-217ENST00000466159 SMG1Q96Q15 3661 aaKnown RBP7.46□□□□□ -1.22
SYNE1-217ENST00000466159 RIF1Q5UIP0 2472 aaKnown RBP7.45□□□□□ -1.22
SYNE1-217ENST00000466159 SPINT2O43291 252 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 PROP1O75360 226 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 RBMXL2O75526 392 aaKnown RBP7.45□□□□□ -1.22
SYNE1-217ENST00000466159 IGHV3-13P01766 116 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 IGHV3-7P01780 117 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 OR8U8P0C7N1 319 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 SERF2P84101 59 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 EIF2S3LQ2VIR3 472 aaKnown RBP7.45□□□□□ -1.22
SYNE1-217ENST00000466159 VHLLQ6RSH7 139 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 H2BFWTQ7Z2G1 175 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 MBD3L1Q8WWY6 194 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 HCFC1P51610 2035 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 AKAP13Q12802 2813 aa7.45□□□□□ -1.22
SYNE1-217ENST00000466159 SRRM5B3KS81 715 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms