RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 NICN1Q9BSH3 213 aa17.34■□□□□ 0.37
USP4-208ENST00000464168 ELOVL1Q9BW60 279 aa17.34■□□□□ 0.37
USP4-208ENST00000464168 TMEM59Q9BXS4 323 aa17.34■□□□□ 0.37
USP4-208ENST00000464168 SLA2Q9H6Q3 261 aa17.34■□□□□ 0.37
USP4-208ENST00000464168 METTL1Q9UBP6 276 aaKnown RBP17.34■□□□□ 0.37
USP4-208ENST00000464168 STUB1Q9UNE7 303 aa17.34■□□□□ 0.37
USP4-208ENST00000464168 BIRC6Q9NR09 4857 aa17.33■□□□□ 0.37
USP4-208ENST00000464168 PROP1O75360 226 aa17.33■□□□□ 0.36
USP4-208ENST00000464168 TFAP2AP05549 437 aa17.33■□□□□ 0.36
USP4-208ENST00000464168 CD40LGP29965 261 aa17.33■□□□□ 0.36
USP4-208ENST00000464168 WNT4P56705 351 aa17.33■□□□□ 0.36
USP4-208ENST00000464168 UNC119Q13432 240 aa17.33■□□□□ 0.36
USP4-208ENST00000464168 C1orf100Q5SVJ3 147 aa17.33■□□□□ 0.36
USP4-208ENST00000464168 LAIR2Q6ISS4 152 aa17.33■□□□□ 0.36
USP4-208ENST00000464168 LRRTM1Q86UE6 522 aa17.33■□□□□ 0.36
USP4-208ENST00000464168 DRAXINQ8NBI3 349 aaPredicted RBP17.33■□□□□ 0.36
USP4-208ENST00000464168 TM2D1Q9BX74 207 aa17.33■□□□□ 0.36
USP4-208ENST00000464168 C11orf54Q9H0W9 315 aaPredicted RBP17.33■□□□□ 0.36
USP4-208ENST00000464168 CHMP1AQ9HD42 196 aaPredicted RBP17.33■□□□□ 0.36
USP4-208ENST00000464168 CA2P00918 260 aa17.32■□□□□ 0.36
USP4-208ENST00000464168 TRGV3P03979 118 aa17.32■□□□□ 0.36
USP4-208ENST00000464168 QRFPP83859 136 aa17.32■□□□□ 0.36
USP4-208ENST00000464168 KCNG3Q8TAE7 436 aa17.32■□□□□ 0.36
USP4-208ENST00000464168 SETD6Q8TBK2 473 aa17.32■□□□□ 0.36
USP4-208ENST00000464168 KCNK15Q9H427 330 aa17.32■□□□□ 0.36
USP4-208ENST00000464168 OR1A1Q9P1Q5 309 aa17.32■□□□□ 0.36
USP4-208ENST00000464168 PSORS1C1Q9UIG5 152 aa17.32■□□□□ 0.36
USP4-208ENST00000464168 TNCP24821 2201 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 A0A0A6YYD4 124 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 TRBV6-6A0A0A6YYG2 114 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 IGKV1-16P04430 117 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 CEACAM6P40199 344 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 LINC00205P59089 165 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 ACSM3Q53FZ2 586 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 GLT8D1Q68CQ7 371 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 MOB1BQ7L9L4 216 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 ANKRD13BQ86YJ7 626 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 NANOGP1Q8N7R0 232 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 RSRP1Q9BUV0 290 aa17.31■□□□□ 0.36
USP4-208ENST00000464168 MYL12BO14950 172 aa17.3■□□□□ 0.36
USP4-208ENST00000464168 SLC22A1O15245 554 aa17.3■□□□□ 0.36
USP4-208ENST00000464168 DHRSXQ8N5I4 330 aa17.3■□□□□ 0.36
USP4-208ENST00000464168 ISOC1Q96CN7 298 aa17.3■□□□□ 0.36
USP4-208ENST00000464168 TSNAXQ99598 290 aaKnown RBP17.3■□□□□ 0.36
USP4-208ENST00000464168 HDHD3Q9BSH5 251 aaPredicted RBP17.3■□□□□ 0.36
USP4-208ENST00000464168 RANGRFQ9HD47 186 aaPredicted RBP17.3■□□□□ 0.36
USP4-208ENST00000464168 PLEKHJ1Q9NW61 149 aa17.3■□□□□ 0.36
USP4-208ENST00000464168 TMEM14DPA8MWL7 114 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 CD37P11049 281 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 CPEP16870 476 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 ZP3P21754 424 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 ZBTB25P24278 435 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 RPS16P62249 146 aaKnown RBP17.29■□□□□ 0.36
USP4-208ENST00000464168 KLF5Q13887 457 aaPredicted RBP17.29■□□□□ 0.36
USP4-208ENST00000464168 FXYD3Q14802 87 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 IL34Q6ZMJ4 242 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 AHSA2Q719I0 299 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 SGPP2Q8IWX5 399 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 ZNF383Q8NA42 475 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 POC5Q8NA72 575 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 GRPEL2Q8TAA5 225 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 EDARADDQ8WWZ3 215 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 PHYHIPQ92561 330 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 PTX4Q96A99 478 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 RIMS4Q9H426 269 aaPredicted RBP17.29■□□□□ 0.36
USP4-208ENST00000464168 ZNF355PQ9NSJ1 428 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 AK3Q9UIJ7 227 aa17.29■□□□□ 0.36
USP4-208ENST00000464168 SPDEFO95238 335 aa17.28■□□□□ 0.36
USP4-208ENST00000464168 GNAO1P09471 354 aa17.28■□□□□ 0.36
USP4-208ENST00000464168 VEGFCP49767 419 aa17.28■□□□□ 0.36
USP4-208ENST00000464168 SSBP2P81877 361 aaPredicted RBP17.28■□□□□ 0.36
USP4-208ENST00000464168 MS4A15Q8N5U1 240 aa17.28■□□□□ 0.36
USP4-208ENST00000464168 OR5T1Q8NG75 326 aa17.28■□□□□ 0.36
USP4-208ENST00000464168 PLCXD1Q9NUJ7 323 aa17.28■□□□□ 0.36
USP4-208ENST00000464168 C13orf42A0A1B0GVH6 325 aa17.27■□□□□ 0.36
USP4-208ENST00000464168 ANKRD34BA5PLL1 514 aa17.27■□□□□ 0.36
USP4-208ENST00000464168 SOCS1O15524 211 aa17.27■□□□□ 0.36
USP4-208ENST00000464168 SLC25A17O43808 307 aa17.27■□□□□ 0.36
USP4-208ENST00000464168 SCTP09683 121 aa17.27■□□□□ 0.36
USP4-208ENST00000464168 ARSBP15848 533 aa17.27■□□□□ 0.36
USP4-208ENST00000464168 HLA-DRB3P79483 266 aa17.27■□□□□ 0.36
USP4-208ENST00000464168 RBM48Q5RL73 367 aaKnown RBP17.27■□□□□ 0.36
USP4-208ENST00000464168 LPAR5Q9H1C0 372 aa17.27■□□□□ 0.36
USP4-208ENST00000464168 H3BUA1 57 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 SRMP19623 302 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 PJVKQ0ZLH3 352 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 HAGHQ16775 308 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 PDPNQ86YL7 162 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 FAM89BQ8N5H3 189 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 PACRGLQ8N7B6 248 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 FBLIM1Q8WUP2 373 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 SPATA25Q9BR10 227 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 TMED9Q9BVK6 235 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 Q9N2K0 584 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 FKBP14Q9NWM8 211 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 ZNF221Q9UK13 617 aa17.26■□□□□ 0.35
USP4-208ENST00000464168 A0A0G2JLM5 398 aa17.25■□□□□ 0.35
USP4-208ENST00000464168 BPNT1O95861 308 aa17.25■□□□□ 0.35
USP4-208ENST00000464168 ADAMTSL5Q6ZMM2 481 aa17.25■□□□□ 0.35
USP4-208ENST00000464168 C8orf59Q8N0T1 100 aaPredicted RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms