RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 REG1BP48304 166 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 DIAPH2-AS1Q14236 149 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 AADACL3Q5VUY0 350 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 OR8H3Q8N146 312 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 DYNAPQ8N1N2 210 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 ZBTB34Q8NCN2 500 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 ZDHHC16Q969W1 377 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 AKR1E2Q96JD6 320 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 ZNF251Q9BRH9 671 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 FXYD6Q9H0Q3 95 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 PRDM13Q9H4Q3 707 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 SDHAF2Q9NX18 166 aa12.75□□□□□ -0.37
USP40-206ENST00000443711 TEP1Q99973 2627 aaKnown RBP12.74□□□□□ -0.37
USP40-206ENST00000443711 IGHV1-3A0A0C4DH29 117 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 M0R1X1 148 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 LYRM1O43325 122 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 PROP1O75360 226 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 FAM157CP0CG43 387 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 PGAM2P15259 253 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 GNRHRP30968 328 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 BRS3P32247 399 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 C16orf87Q6PH81 154 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 IDO2Q6ZQW0 420 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 MOB3BQ86TA1 216 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 SLC38A6Q8IZM9 456 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 DRAM1Q8N682 238 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 ZFAND1Q8TCF1 268 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 FN1P02751 2386 aaKnown RBP12.74□□□□□ -0.37
USP40-206ENST00000443711 MXRA5Q9NR99 2828 aa12.74□□□□□ -0.37
USP40-206ENST00000443711 A0A1W2PPI3 338 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 IFITM3Q01628 133 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 ASAH1Q13510 395 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 SURF2Q15527 256 aaPredicted RBP12.73□□□□□ -0.37
USP40-206ENST00000443711 AANATQ16613 207 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 TUSC1Q2TAM9 212 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 MZT2BQ6NZ67 158 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 RBMS3Q6XE24 437 aaKnown RBP12.73□□□□□ -0.37
USP40-206ENST00000443711 Q6YL49 198 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 MARCH1Q8TCQ1 289 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 SCGB3A2Q96PL1 93 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 NABP2Q9BQ15 211 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 RSRP1Q9BUV0 290 aa12.73□□□□□ -0.37
USP40-206ENST00000443711 MRPL20Q9BYC9 149 aaKnown RBP12.73□□□□□ -0.37
USP40-206ENST00000443711 MDFIC2A0A1B0GVS7 189 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 VGLL3A8MV65 326 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 GPR31O00270 319 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 IGLV2-14P01704 120 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 CT45A6P0DMU7 189 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 CT45A5P0DMU8 189 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 CT45A7P0DMV0 189 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 PAX6P26367 422 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 S100GP29377 79 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 DYNLT3P51808 116 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 DEFA1P59665 94 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 DEFA3P59666 94 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 LRRC75BQ2VPJ9 315 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 ZNF818PQ6ZRF7 136 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 CMTM1Q8IZ96 169 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 BVESQ8NE79 360 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 OR13C8Q8NGS7 320 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 C5orf30Q96GV9 206 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 ZNF486Q96H40 463 aaPredicted RBP12.72□□□□□ -0.37
USP40-206ENST00000443711 ADTRPQ96IZ2 230 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 ZNF48Q96MX3 618 aaPredicted RBP12.72□□□□□ -0.37
USP40-206ENST00000443711 HSD17B10Q99714 261 aaKnown RBP12.72□□□□□ -0.37
USP40-206ENST00000443711 SSX3Q99909 188 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 SLC25A21Q9BQT8 299 aaPredicted RBP12.72□□□□□ -0.37
USP40-206ENST00000443711 OCEL1Q9H607 264 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 TBC1D24Q9ULP9 559 aa12.72□□□□□ -0.37
USP40-206ENST00000443711 TIMM23O14925 209 aa12.71□□□□□ -0.37
USP40-206ENST00000443711 THBS3P49746 956 aa12.71□□□□□ -0.37
USP40-206ENST00000443711 BAMBIQ13145 260 aa12.71□□□□□ -0.37
USP40-206ENST00000443711 ABCA11PQ4W5N1 156 aa12.71□□□□□ -0.37
USP40-206ENST00000443711 ZNF66Q6ZN08 573 aa12.71□□□□□ -0.37
USP40-206ENST00000443711 SIGLECL1Q8N7X8 197 aa12.71□□□□□ -0.37
USP40-206ENST00000443711 DRAXINQ8NBI3 349 aaPredicted RBP12.71□□□□□ -0.37
USP40-206ENST00000443711 ZNF418Q8TF45 676 aaPredicted RBP12.71□□□□□ -0.37
USP40-206ENST00000443711 MRGPRFQ96AM1 343 aa12.71□□□□□ -0.37
USP40-206ENST00000443711 DPAGT1Q9H3H5 408 aa12.71□□□□□ -0.37
USP40-206ENST00000443711 GPR132Q9UNW8 380 aa12.71□□□□□ -0.37
USP40-206ENST00000443711 C14orf166Q9Y224 244 aaKnown RBP12.71□□□□□ -0.37
USP40-206ENST00000443711 CTSDP07339 412 aaPredicted RBP12.7□□□□□ -0.38
USP40-206ENST00000443711 CD1BP29016 333 aa12.7□□□□□ -0.38
USP40-206ENST00000443711 MC5RP33032 325 aa12.7□□□□□ -0.38
USP40-206ENST00000443711 DUTP33316 252 aaKnown RBP12.7□□□□□ -0.38
USP40-206ENST00000443711 IER3P46695 156 aa12.7□□□□□ -0.38
USP40-206ENST00000443711 CCR6P51684 374 aa12.7□□□□□ -0.38
USP40-206ENST00000443711 TAGLNQ01995 201 aaKnown RBP12.7□□□□□ -0.38
USP40-206ENST00000443711 HABP2Q14520 560 aaPredicted RBP12.7□□□□□ -0.38
USP40-206ENST00000443711 RBMS2Q15434 407 aaKnown RBP12.7□□□□□ -0.38
USP40-206ENST00000443711 THNSL2Q86YJ6 484 aa12.7□□□□□ -0.38
USP40-206ENST00000443711 SSMEM1Q8WWF3 244 aa12.7□□□□□ -0.38
USP40-206ENST00000443711 CFHR4Q92496 578 aa12.7□□□□□ -0.38
USP40-206ENST00000443711 PALMDQ9NP74 551 aa12.7□□□□□ -0.38
USP40-206ENST00000443711 ANK3Q12955 4377 aaKnown RBP12.69□□□□□ -0.38
USP40-206ENST00000443711 IGHV3-72A0A0B4J1Y9 119 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 BTBD17A6NE02 478 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 RNF212BA8MTL3 300 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 TNFSF12O43508 249 aa12.69□□□□□ -0.38
USP40-206ENST00000443711 PGLYRP1O75594 196 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms