RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 CD1BP29016 333 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 RCVRNP35243 200 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 RFX2P48378 723 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 LINC00205P59089 165 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 RPL15P61313 204 aaKnown RBP9.93□□□□□ -0.82
USP40-205ENST00000430158 MRPS10P82664 201 aaKnown RBP9.93□□□□□ -0.82
USP40-205ENST00000430158 LSAMPQ13449 338 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 EIF4EBP1Q13541 118 aaPredicted RBP9.93□□□□□ -0.82
USP40-205ENST00000430158 DYRK1AQ13627 763 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 LY6EQ16553 131 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 CNPY1Q3B7I2 92 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 TGIF2LXQ8IUE1 241 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.93□□□□□ -0.82
USP40-205ENST00000430158 OR56B4Q8NH76 319 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 GIMAP1Q8WWP7 306 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 GINS4Q9BRT9 223 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 IFT46Q9NQC8 304 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 BATF3Q9NR55 127 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 NECAP2Q9NVZ3 263 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 SDHAF2Q9NX18 166 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 C1RLQ9NZP8 487 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 PIPOXQ9P0Z9 390 aa9.93□□□□□ -0.82
USP40-205ENST00000430158 IGHV3-72A0A0B4J1Y9 119 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 FABP12A6NFH5 140 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 TXNL1O43396 289 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 PMP2P02689 132 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 CD74P04233 296 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 AMY1AP04745 511 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 AMY2AP04746 511 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 SNRNP70P08621 437 aaKnown RBP9.92□□□□□ -0.82
USP40-205ENST00000430158 HKR1P10072 659 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 AADACP22760 399 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 PTBP1P26599 531 aaKnown RBP eCLIP9.92□□□□□ -0.822e-7■■■■□ 23.9
USP40-205ENST00000430158 HLA-DMAP28067 261 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 FCGR2CP31995 323 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 BRS3P32247 399 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 HRH1P35367 487 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 TAS2R46P59540 309 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 ARPC4P59998 168 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 SSBP1Q04837 148 aaKnown RBP9.92□□□□□ -0.82
USP40-205ENST00000430158 IL18Q14116 193 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 RNASE12Q5GAN4 147 aaKnown RBP9.92□□□□□ -0.82
USP40-205ENST00000430158 MOB3BQ86TA1 216 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 TMEM219Q86XT9 240 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 OR5AN1Q8NGI8 311 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 FCAMRQ8WWV6 532 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 OR2D2Q9H210 308 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 PLSCR3Q9NRY6 295 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 ZNF107Q9UII5 783 aaPredicted RBP9.92□□□□□ -0.82
USP40-205ENST00000430158 ANK2Q01484 3957 aa9.92□□□□□ -0.82
USP40-205ENST00000430158 TMEM89A2RUT3 159 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 H0YJW9 148 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 RBBP9O75884 186 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 NDUFA7O95182 113 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 PPYP01298 95 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 GPR12P47775 334 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 VAX1Q5SQQ9 334 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 ZNF383Q8NA42 475 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 TMEM229BQ8NBD8 167 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 DDB2Q92466 427 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 TRIM63Q969Q1 353 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 EAF1Q96JC9 268 aaPredicted RBP9.91□□□□□ -0.82
USP40-205ENST00000430158 RITA1Q96K30 269 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 RBM14Q96PK6 669 aaKnown RBP9.91□□□□□ -0.82
USP40-205ENST00000430158 S1PR3Q99500 378 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 SDHCQ99643 169 aaPredicted RBP9.91□□□□□ -0.82
USP40-205ENST00000430158 C19orf24Q9BVV8 132 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 ABCB10Q9NRK6 738 aa9.91□□□□□ -0.82
USP40-205ENST00000430158 DNHD1Q96M86 4753 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 BTBD17A6NE02 478 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 TSPAN9O75954 239 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 OR2F2O95006 317 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 IGKV1D-33P01593 117 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 IGKV1-33P01594 117 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 CD3DP04234 171 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 ZNF735P0CB33 412 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 FAM106CPP0CH98 169 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 S100A5P33763 92 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 COMPP49747 757 aaPredicted RBP9.9□□□□□ -0.82
USP40-205ENST00000430158 LUMP51884 338 aaPredicted RBP9.9□□□□□ -0.82
USP40-205ENST00000430158 ARHGDIBP52566 201 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 ACTBP60709 375 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 ACTG1P63261 375 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 MSMO1Q15800 293 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 FAM131AQ6UXB0 335 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 GLDNQ6ZMI3 551 aaPredicted RBP9.9□□□□□ -0.82
USP40-205ENST00000430158 Q6ZSV7 163 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 Q8N2B8 174 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 MFSD4AQ8N468 514 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 DRAXINQ8NBI3 349 aaPredicted RBP9.9□□□□□ -0.82
USP40-205ENST00000430158 OR4D10Q8NGI6 311 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 OR5H2Q8NGV7 314 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 CAPSLQ8WWF8 208 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 TMEM158Q8WZ71 300 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 MOB3AQ96BX8 217 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 TINAGL1Q9GZM7 467 aaPredicted RBP9.9□□□□□ -0.82
USP40-205ENST00000430158 SRRQ9GZT4 340 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 EHFQ9NZC4 300 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 ZNF221Q9UK13 617 aa9.9□□□□□ -0.82
USP40-205ENST00000430158 PITPNC1Q9UKF7 332 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms