RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 HACD4Q5VWC8 232 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 MBNL2Q5VZF2 373 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF660Q6AZW8 331 aaPredicted RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 LPCAT3Q6P1A2 487 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM89BQ8N5H3 189 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 DAND5Q8N907 189 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 OR7G3Q8NG95 312 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 OR4C5Q8NGB2 326 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SFXN5Q8TD22 340 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 TNFAIP8L1Q8WVP5 186 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 HPSE2Q8WWQ2 592 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ADTRPQ96IZ2 230 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 OPRPNQ99935 248 aaPredicted RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SRSF8Q9BRL6 282 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC35B3Q9H1N7 401 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM133Q9H2Q1 129 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM38BQ9NVV0 291 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 TFR2Q9UP52 801 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 FLVCR1Q9Y5Y0 555 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 NACAE9PAV3 2078 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 PIGBOS1A0A0B4J2F0 54 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 KIR2DL5BA0A0G2JN68 375 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 KIR2DL5BA0A0G2JPC4 375 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 NBDYA0A0U1RRE5 68 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 MFSD2BA6NFX1 497 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 DHRS7CA6NNS2 312 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 LECT2O14960 151 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 NOL3O60936 208 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 FOLR2P14207 255 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 P2RX3P56373 397 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 SCAND1P57086 179 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 GPX6P59796 221 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 WDR38Q5JTN6 314 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 TEX30Q5JUR7 227 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF826PQ6ZT77 177 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC25A26Q70HW3 274 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 COMMD6Q7Z4G1 85 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 C10orf67Q8IYJ2 551 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 KIR2DL5AQ8N109 375 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF675Q8TD23 568 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 PGLYRP3Q96LB9 341 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 REEP4Q9H6H4 257 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 VCX3AQ9NNX9 186 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 CHRAC1Q9NRG0 131 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 CNOT2Q9NZN8 540 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 MRPS18CQ9Y3D5 142 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 DMXL1Q9Y485 3027 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 IGLV3-12A0A075B6K2 115 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 A0A1B0GTI1 187 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 RPL37AP8A6NKH3 93 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 APOMO95445 188 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 PFN1P07737 140 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 MPV17P39210 176 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 RBP2P50120 134 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 CAV2P51636 162 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF121P58317 390 aaPredicted RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 S100A10P60903 97 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 COQ5Q5HYK3 327 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 ETFRF1Q6IPR1 90 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 GLDNQ6ZMI3 551 aaPredicted RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 PAQR9Q6ZVX9 377 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 HMGN2P46Q86SG4 172 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 OR7G2Q8NG99 324 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 OR1M1Q8NGA1 313 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 CCDC32Q9BV29 185 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 MRPS26Q9BYN8 205 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 RGCCQ9H4X1 137 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 NXT2Q9NPJ8 142 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 CLN6Q9NWW5 311 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 CHD7Q9P2D1 2997 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 PHLDA3Q9Y5J5 127 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 MYH9P35579 1960 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 IGHV3-43A0A0B4J1X8 118 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 A0A1W2PPI3 338 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM72CH0Y354 149 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF500O60304 480 aaPredicted RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 APOA1P02647 267 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 TK1P04183 234 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 IGHV3-43DP0DP04 118 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 RRASP10301 218 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 MYL12AP19105 171 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 MYL9P24844 172 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 G6PCP35575 357 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 IDH3AP50213 366 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF140P52738 457 aaPredicted RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 TAS2R30P59541 319 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 CYLC2Q14093 348 aaPredicted RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 MSMO1Q15800 293 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 HSD17B12Q53GQ0 312 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM72AQ5TYM5 149 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM72DQ6L9T8 149 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM72BQ86X60 149 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF561Q8N587 486 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 OR52E5Q8NH55 327 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 PTX4Q96A99 478 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 POM121L2Q96KW2 1035 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 CMSS1Q9BQ75 279 aaKnown RBP2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 ACPTQ9BZG2 426 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC25A32Q9H2D1 315 aa2.13□□□□□ -2.07
CCDC88A-205ENST00000426576 C16orf95Q9H693 158 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms