RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 POM121L2Q96KW2 1035 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 RSPO3Q9BXY4 272 aaPredicted RBP6.3□□□□□ -1.4
SCN9A-202ENST00000409435 GABARAPL3Q9BY60 117 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 DPH3P1Q9H4G8 78 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM140Q9NV12 185 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 SPCS1Q9Y6A9 102 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 KLK8O60259 260 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 GPX5O75715 221 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 NGFRP08138 427 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF708P17019 499 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 LIMS1P48059 325 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 PLAURQ03405 335 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF415Q09FC8 603 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 GGACTQ9BVM4 153 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 SSBP4Q9BWG4 385 aaPredicted RBP6.3□□□□□ -1.4
SCN9A-202ENST00000409435 CDCA4Q9BXL8 241 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 REG4Q9BYZ8 158 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 MAGT1Q9H0U3 335 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 MEGF9Q9H1U4 602 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 ZMAT4Q9H898 229 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 SH2D2AQ9NP31 389 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 CES1P1Q9UKY3 287 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 CYSLTR1Q9Y271 337 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 OR2W1Q9Y3N9 320 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 SPTBN2O15020 2390 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 H3BQ15 152 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 RFESDQ8TAC1 157 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 ASB10Q8WXI3 467 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 PP6455Q8WZ26 134 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 MISP3Q96FF7 219 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 CHST6Q9GZX3 395 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 GSN-AS1Q9NRJ2 163 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 STARD10Q9Y365 291 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 MOB4Q9Y3A3 225 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 MS4A18H0YCH9 400 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 LILRA1O75019 489 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 CD74P04233 296 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 KIR2DS2P43631 304 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 IER3P46695 156 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 CTAG1AP78358 180 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 FMODQ06828 376 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 EGR3Q06889 387 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 SRSF4Q08170 494 aaKnown RBP6.29□□□□□ -1.4
SCN9A-202ENST00000409435 MS4A18Q3C1V0 323 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 CGB2Q6NT52 195 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 OR2C3Q8N628 320 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF502Q8TBZ5 544 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 SORT1Q99523 831 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 PSME4Q14997 1843 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 LOC102723996A0A087X1L8 192 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 MEX3AA1L020 520 aaKnown RBP6.29□□□□□ -1.4
SCN9A-202ENST00000409435 IGSF23A1L1A6 192 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 LSM6P62312 80 aaKnown RBP6.29□□□□□ -1.4
SCN9A-202ENST00000409435 PSG6Q00889 435 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 SMAGPQ0VAQ4 97 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 CR1LQ2VPA4 569 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 LINC00303Q3SY05 128 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 OR4F17Q8NGA8 305 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 OR5A1Q8NGJ0 315 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 OR1L1Q8NH94 360 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 SPSB1Q96BD6 273 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 YIPF6Q96EC8 236 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 CLEC2DQ9UHP7 191 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 ST6GALNAC2Q9UJ37 374 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 SPRY1O43609 319 aaPredicted RBP6.29□□□□□ -1.4
SCN9A-202ENST00000409435 UPK3AO75631 287 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 HBZP02008 142 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 HRH1P35367 487 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 MAPK1IP1LQ8NDC0 245 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 VSTM2AQ8TAG5 236 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 RAB40CQ96S21 281 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 VAX2Q9UIW0 290 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 HSF4Q9ULV5 492 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 IGKV3-7A0A075B6H7 116 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 TRAV8-2A0A0B4J237 113 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 CST7O76096 145 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 FCGR3AP08637 254 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 PGA3P0DJD8 388 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 ZBTB25P24278 435 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 RPL30P62888 115 aaKnown RBP6.29□□□□□ -1.4
SCN9A-202ENST00000409435 GAGE2BQ13066 116 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 GAGE2EQ4V326 116 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 FAAP20Q6NZ36 180 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 PRSS54Q6PEW0 395 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 MRGPRDQ8TDS7 321 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF48Q96MX3 618 aaPredicted RBP6.29□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF385AQ96PM9 386 aaKnown RBP6.29□□□□□ -1.4
SCN9A-202ENST00000409435 DUX5Q96PT3 197 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 PEMTQ9UBM1 199 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 GAGE2DQ9UEU5 116 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 KCNE3Q9Y6H6 103 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF646O15015 1829 aaPredicted RBP6.29□□□□□ -1.4
SCN9A-202ENST00000409435 NDUFB6O95139 128 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 KLK2P20151 261 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 KIR2DL2P43627 348 aaPredicted RBP6.29□□□□□ -1.4
SCN9A-202ENST00000409435 CLDN18P56856 261 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 IL13RA2Q14627 380 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM101Q96IK0 257 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM167BQ9NRX6 74 aa6.29□□□□□ -1.4
SCN9A-202ENST00000409435 MRPS18CQ9Y3D5 142 aaKnown RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms