RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MIDNQ504T8 468 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 RUSC1-AS1Q66K80 236 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 BRD3OSQ6XYD6 125 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 LHFPL4Q7Z7J7 247 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 TEX29Q8N6K0 151 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 CCDC71LQ8N9Z2 235 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 MINDY2Q8NBR6 621 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 BVESQ8NE79 360 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 SMR3AQ99954 134 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 RTBDNQ9BSG5 229 aaPredicted RBP14.66□□□□□ -0.06
SDC1-203ENST00000403076 SLC2A9Q9NRM0 540 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 GAB2Q9UQC2 676 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 TBL2Q9Y4P3 447 aaKnown RBP14.66□□□□□ -0.06
SDC1-203ENST00000403076 TEX13DA0A0J9YY54 714 aaPredicted RBP14.66□□□□□ -0.06
SDC1-203ENST00000403076 EPHA1P21709 976 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 SAA4P35542 130 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 REG1BP48304 166 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 RAB25P57735 213 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 OXA1LQ15070 435 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 MSMO1Q15800 293 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 KLF17Q5JT82 389 aaPredicted RBP14.66□□□□□ -0.06
SDC1-203ENST00000403076 MINOS1Q5TGZ0 78 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 TGIF2LXQ8IUE1 241 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 ADAD2Q8NCV1 583 aaKnown RBP14.66□□□□□ -0.06
SDC1-203ENST00000403076 BEX2Q9BXY8 128 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 BEX1Q9HBH7 125 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 HILPDAQ9Y5L2 63 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 MINOS1-NBL1R4GNA1 71 aa14.66□□□□□ -0.06
SDC1-203ENST00000403076 LY6G6DO95868 133 aa14.65□□□□□ -0.06
SDC1-203ENST00000403076 IGLV2-14P01704 120 aa14.65□□□□□ -0.06
SDC1-203ENST00000403076 GAPDHP04406 335 aaKnown RBP14.65□□□□□ -0.06
SDC1-203ENST00000403076 TPTE2P1Q5T6R2 138 aa14.65□□□□□ -0.06
SDC1-203ENST00000403076 ZNF833PQ6ZTB9 187 aa14.65□□□□□ -0.06
SDC1-203ENST00000403076 DRAXINQ8NBI3 349 aaPredicted RBP14.65□□□□□ -0.06
SDC1-203ENST00000403076 CHPT1Q8WUD6 406 aa14.65□□□□□ -0.06
SDC1-203ENST00000403076 C5orf30Q96GV9 206 aa14.65□□□□□ -0.06
SDC1-203ENST00000403076 GPHA2Q96T91 129 aa14.65□□□□□ -0.06
SDC1-203ENST00000403076 ZNF251Q9BRH9 671 aa14.65□□□□□ -0.06
SDC1-203ENST00000403076 RNF212BA8MTL3 300 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 INMT-MINDY4F8WBC2 141 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 PROP1O75360 226 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 PGLYRP1O75594 196 aaPredicted RBP14.64□□□□□ -0.07
SDC1-203ENST00000403076 ANXA7P20073 488 aaKnown RBP14.64□□□□□ -0.07
SDC1-203ENST00000403076 ZNF137PP52743 207 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 TAS2R31P59538 309 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 DIAPH2-AS1Q14236 149 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 SSX2Q16385 188 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 CLEC9AQ6UXN8 241 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 SGPP2Q8IWX5 399 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 PIP4P2Q8N4L2 257 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 TCTEX1D2Q8WW35 142 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 RTN4IP1Q8WWV3 396 aaPredicted RBP14.64□□□□□ -0.07
SDC1-203ENST00000403076 ST6GALNAC6Q969X2 333 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 HSD17B10Q99714 261 aaKnown RBP14.64□□□□□ -0.07
SDC1-203ENST00000403076 MS4A7Q9GZW8 240 aaPredicted RBP14.64□□□□□ -0.07
SDC1-203ENST00000403076 NUP50Q9UKX7 468 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 FAM96BQ9Y3D0 163 aa14.64□□□□□ -0.07
SDC1-203ENST00000403076 LY6LH3BQJ8 138 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 MPPED1O15442 326 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 HNF1AP20823 631 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 SRP14P37108 136 aaKnown RBP14.63□□□□□ -0.07
SDC1-203ENST00000403076 BPIFB3P59826 476 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 RND3P61587 244 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 CATR1Q13166 79 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 LDLRAD2Q5SZI1 272 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 FAM120AOSQ5T036 256 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 FAM71F2Q6NXP2 309 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 C11orf88Q6PI97 169 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 ZNF66Q6ZN08 573 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 MOB3BQ86TA1 216 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 TBC1D26Q86UD7 250 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 SLC25A42Q86VD7 318 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 OR51H1Q8NH63 302 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 MALSU1Q96EH3 234 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 MRPL20Q9BYC9 149 aaKnown RBP14.63□□□□□ -0.07
SDC1-203ENST00000403076 ZANQ9Y493 2812 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 TLN2Q9Y4G6 2542 aa14.63□□□□□ -0.07
SDC1-203ENST00000403076 TXNL1O43396 289 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 PEX14O75381 377 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 DHFRP00374 187 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 DUTP33316 252 aaKnown RBP14.62□□□□□ -0.07
SDC1-203ENST00000403076 THBS3P49746 956 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 C4orf46Q504U0 113 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 TMEM128Q5BJH2 165 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 GLDNQ6ZMI3 551 aaPredicted RBP14.62□□□□□ -0.07
SDC1-203ENST00000403076 KCTD9Q7L273 389 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 C17orf50Q8WW18 174 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 ADTRPQ96IZ2 230 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 MARVELD1Q9BSK0 173 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 KCNIP3Q9Y2W7 256 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 PRELID3BQ9Y3B1 194 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 OTOGQ6ZRI0 2925 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 TEX15Q9BXT5 2789 aa14.62□□□□□ -0.07
SDC1-203ENST00000403076 OOSP1A8MZH6 123 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 CT45A6P0DMU7 189 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 CT45A5P0DMU8 189 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 CT45A7P0DMV0 189 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 VAMP1P23763 118 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 LINC00205P59089 165 aa14.61□□□□□ -0.07
SDC1-203ENST00000403076 ZNF816Q0VGE8 651 aaPredicted RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms