RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 ZNF221Q9UK13 617 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 GAB2Q9UQC2 676 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 TIMM23O14925 209 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 HOXA3O43365 443 aaPredicted RBP12.82□□□□□ -0.36
HMGA1-204ENST00000401473 AMY2AP04746 511 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 CT45A6P0DMU7 189 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 CT45A5P0DMU8 189 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 CT45A7P0DMV0 189 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 IL3RAP26951 378 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 GNRHRP30968 328 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 SCGB2A2Q13296 93 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 ZNF846Q147U1 533 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 TMEM17Q86X19 198 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 TGIF2LXQ8IUE1 241 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 ARRDC1Q8N5I2 433 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 DRAM1Q8N682 238 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 ZNF645Q8N7E2 425 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 CFHR4Q92496 578 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 GPHA2Q96T91 129 aa12.82□□□□□ -0.36
HMGA1-204ENST00000401473 IGHV3-72A0A0B4J1Y9 119 aa12.81□□□□□ -0.36
HMGA1-204ENST00000401473 OOSP1A8MZH6 123 aa12.81□□□□□ -0.36
HMGA1-204ENST00000401473 PLXNB1O43157 2135 aa12.81□□□□□ -0.36
HMGA1-204ENST00000401473 HABP2Q14520 560 aaPredicted RBP12.81□□□□□ -0.36
HMGA1-204ENST00000401473 ZNF57Q68EA5 555 aaPredicted RBP12.81□□□□□ -0.36
HMGA1-204ENST00000401473 OR51S1Q8NGJ8 323 aa12.81□□□□□ -0.36
HMGA1-204ENST00000401473 TERB2Q8NHR7 220 aa12.81□□□□□ -0.36
HMGA1-204ENST00000401473 S1PR3Q99500 378 aa12.81□□□□□ -0.36
HMGA1-204ENST00000401473 NABP2Q9BQ15 211 aa12.81□□□□□ -0.36
HMGA1-204ENST00000401473 MRPL20Q9BYC9 149 aaKnown RBP12.81□□□□□ -0.36
HMGA1-204ENST00000401473 WDR12Q9GZL7 423 aaKnown RBP12.81□□□□□ -0.36
HMGA1-204ENST00000401473 COL6A5A8TX70 2615 aa12.81□□□□□ -0.36
HMGA1-204ENST00000401473 LINC00854A0A1B0GVQ3 168 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 FAM90A9PA6NNJ1 464 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 H3BUX3 64 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 IFITM3Q01628 133 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 MEF2DQ14814 521 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 SCGB2B2Q4G0G5 96 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 TRIQKQ629K1 86 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 ZNF818PQ6ZRF7 136 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 MOB3BQ86TA1 216 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 OR8H3Q8N146 312 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 ZDHHC22Q8N966 263 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 FAM216AQ8WUB2 273 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 CCDC32Q9BV29 185 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 SLC5A7Q9GZV3 580 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 TNFRSF19Q9NS68 423 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 PLA2G10O15496 165 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 DYNLT3P51808 116 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 AP3S2P59780 193 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 EIF4EBP1Q13541 118 aaPredicted RBP12.8□□□□□ -0.36
HMGA1-204ENST00000401473 SLC9A3R2Q15599 337 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 AANATQ16613 207 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 LRRC75BQ2VPJ9 315 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 CCDC144NLQ6NUI1 221 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 CCBE1Q6UXH8 406 aaPredicted RBP12.8□□□□□ -0.36
HMGA1-204ENST00000401473 RBMS3Q6XE24 437 aaKnown RBP12.8□□□□□ -0.36
HMGA1-204ENST00000401473 GLDNQ6ZMI3 551 aaPredicted RBP12.8□□□□□ -0.36
HMGA1-204ENST00000401473 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.8□□□□□ -0.36
HMGA1-204ENST00000401473 OR13C8Q8NGS7 320 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 ZNF418Q8TF45 676 aaPredicted RBP12.8□□□□□ -0.36
HMGA1-204ENST00000401473 FXYD6Q9H0Q3 95 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 MCUBQ9NWR8 336 aa12.8□□□□□ -0.36
HMGA1-204ENST00000401473 LINC00473A8K010 186 aa12.79□□□□□ -0.36
HMGA1-204ENST00000401473 M0R1X1 148 aa12.79□□□□□ -0.36
HMGA1-204ENST00000401473 VENTXO95231 258 aa12.79□□□□□ -0.36
HMGA1-204ENST00000401473 HILS1P60008 231 aa12.79□□□□□ -0.36
HMGA1-204ENST00000401473 HERV-K104P61576 105 aa12.79□□□□□ -0.36
HMGA1-204ENST00000401473 BAMBIQ13145 260 aa12.79□□□□□ -0.36
HMGA1-204ENST00000401473 FAM71F2Q6NXP2 309 aa12.79□□□□□ -0.36
HMGA1-204ENST00000401473 ZNF383Q8NA42 475 aa12.79□□□□□ -0.36
HMGA1-204ENST00000401473 SSMEM1Q8WWF3 244 aa12.79□□□□□ -0.36
HMGA1-204ENST00000401473 DISC1C4P0D8 188 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 TNFSF12O43508 249 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 DUTP33316 252 aaKnown RBP12.78□□□□□ -0.36
HMGA1-204ENST00000401473 RPL30P62888 115 aaKnown RBP12.78□□□□□ -0.36
HMGA1-204ENST00000401473 CHIAQ9BZP6 476 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 ABCB10Q9NRK6 738 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 SLC2A8Q9NY64 477 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 TNCP24821 2201 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 DNAJC9-AS1A6NH13 148 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 TXNL1O43396 289 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 SLC22A5O76082 557 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 INPP1P49441 399 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 UCP3P55916 312 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 LY6EQ16553 131 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 IDO2Q6ZQW0 420 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 OR5AN1Q8NGI8 311 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 MARCH1Q8TCQ1 289 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 DEDD2Q8WXF8 326 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 RITA1Q96K30 269 aa12.78□□□□□ -0.36
HMGA1-204ENST00000401473 H0YJW9 148 aa12.77□□□□□ -0.37
HMGA1-204ENST00000401473 UPK1BO75841 260 aa12.77□□□□□ -0.37
HMGA1-204ENST00000401473 IFNA2P01563 188 aa12.77□□□□□ -0.37
HMGA1-204ENST00000401473 SNRNP70P08621 437 aaKnown RBP12.77□□□□□ -0.37
HMGA1-204ENST00000401473 PI3P19957 117 aa12.77□□□□□ -0.37
HMGA1-204ENST00000401473 BRS3P32247 399 aa12.77□□□□□ -0.37
HMGA1-204ENST00000401473 BRWD1-AS2P59051 145 aa12.77□□□□□ -0.37
HMGA1-204ENST00000401473 BVESQ8NE79 360 aa12.77□□□□□ -0.37
HMGA1-204ENST00000401473 RSRP1Q9BUV0 290 aa12.77□□□□□ -0.37
HMGA1-204ENST00000401473 DPAGT1Q9H3H5 408 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms