RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MADCAM1Q13477 382 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 KLF9Q13886 244 aaPredicted RBP7.41□□□□□ -1.22
VPS53-203ENST00000401468 MSMO1Q15800 293 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 BAK1Q16611 211 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 PYDC2Q56P42 97 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 FAM71F2Q6NXP2 309 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 PRR18Q8N4B5 295 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 OR10J5Q8NHC4 309 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 IL1F10Q8WWZ1 152 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 CREB3L1Q96BA8 519 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 ZNF251Q9BRH9 671 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 THAP7Q9BT49 309 aaPredicted RBP7.41□□□□□ -1.22
VPS53-203ENST00000401468 ABHD14AQ9BUJ0 271 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 CCDC32Q9BV29 185 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 WDR12Q9GZL7 423 aaKnown RBP7.41□□□□□ -1.22
VPS53-203ENST00000401468 PARP12Q9H0J9 701 aaKnown RBP7.41□□□□□ -1.22
VPS53-203ENST00000401468 MEGF9Q9H1U4 602 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 IFI27L2Q9H2X8 130 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 NECAP2Q9NVZ3 263 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 RDH8Q9NYR8 311 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 GNG12Q9UBI6 72 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.41□□□□□ -1.22
VPS53-203ENST00000401468 RYR3Q15413 4870 aa7.41□□□□□ -1.22
VPS53-203ENST00000401468 IGHV3-43A0A0B4J1X8 118 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 VGLL3A8MV65 326 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 OOSP1A8MZH6 123 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 ZNF736B4DX44 427 aaPredicted RBP7.4□□□□□ -1.22
VPS53-203ENST00000401468 IGLV2-14P01704 120 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 CD3DP04234 171 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 ZNF735P0CB33 412 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 OR5H8P0DN80 308 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 IGHV3-43DP0DP04 118 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 NFYBP25208 207 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 CEACAM6P40199 344 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 RAB7AP51149 207 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 DYNLT3P51808 116 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 PRRX1P54821 245 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 ARPC4P59998 168 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 KRTAP10-3P60369 221 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 ZNF816Q0VGE8 651 aaPredicted RBP7.4□□□□□ -1.22
VPS53-203ENST00000401468 HABP2Q14520 560 aaPredicted RBP7.4□□□□□ -1.22
VPS53-203ENST00000401468 AANATQ16613 207 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 ZNF833PQ6ZTB9 187 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 LHFPL1Q86WI0 220 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 ARRDC1Q8N5I2 433 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.4□□□□□ -1.22
VPS53-203ENST00000401468 OR2AK2Q8NG84 335 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 C17orf50Q8WW18 174 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 LEAP2Q969E1 77 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 MALSU1Q96EH3 234 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 C11orf54Q9H0W9 315 aaPredicted RBP7.4□□□□□ -1.22
VPS53-203ENST00000401468 SLC2A8Q9NY64 477 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 OR2W1Q9Y3N9 320 aa7.4□□□□□ -1.22
VPS53-203ENST00000401468 AMMECR1Q9Y4X0 333 aaPredicted RBP7.4□□□□□ -1.22
VPS53-203ENST00000401468 FAM172BPA6NC97 362 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 TOR1AO14656 332 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 BET1O15155 118 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 PROP1O75360 226 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 FBXO24O75426 580 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 PPYP01298 95 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 ARG1P05089 322 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 IL7P13232 177 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 COX7A1P24310 79 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 HLA-DMAP28067 261 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 HTR1DP28221 377 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 RFX2P48378 723 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 UCP3P55916 312 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 FOXL1Q12952 345 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 EIF4EBP1Q13541 118 aaPredicted RBP7.39□□□□□ -1.23
VPS53-203ENST00000401468 ZNF846Q147U1 533 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 MEF2DQ14814 521 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 LTC4SQ16873 150 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 AADACL3Q5VUY0 350 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 STEAP1BQ6NZ63 245 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 LHFPL4Q7Z7J7 247 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 OR4D10Q8NGI6 311 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 OR10V1Q8NGI7 309 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 OR4C16Q8NGL9 310 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 OR5H2Q8NGV7 314 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 MOB3AQ96BX8 217 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 GINS4Q9BRT9 223 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 EHFQ9NZC4 300 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 PIPOXQ9P0Z9 390 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 ZNRD1Q9P1U0 126 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 DPM3Q9P2X0 92 aa7.39□□□□□ -1.23
VPS53-203ENST00000401468 SAA2-SAA4A0A096LPE2 208 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 IGKV1D-13A0A0B4J2D9 117 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 A0A1W2PPI3 338 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 FAM90A9PA6NNJ1 464 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 LEUTXA8MZ59 168 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 HSPA12AO43301 675 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 TXNL1O43396 289 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 SLC22A5O76082 557 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 IGHV3-7P01780 117 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 PMP2P02689 132 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 AKAIN1P0CW23 69 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 SAA2P0DJI9 122 aaPredicted RBP7.38□□□□□ -1.23
VPS53-203ENST00000401468 IGKV1-13P0DP09 117 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 AADACP22760 399 aa7.38□□□□□ -1.23
VPS53-203ENST00000401468 NFYAP23511 347 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms