RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 LRFN3Q9BTN0 628 aa8□□□□□ -1.13
COL28A1-201ENST00000399429 OR2D2Q9H210 308 aa8□□□□□ -1.13
COL28A1-201ENST00000399429 FBLN5Q9UBX5 448 aa8□□□□□ -1.13
COL28A1-201ENST00000399429 RPL36A-HNRNPH2H7BZ11 118 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 CCL25O15444 150 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 CCL5P13501 91 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 MRPS11P82912 194 aaKnown RBP7.99□□□□□ -1.13
COL28A1-201ENST00000399429 EXT1Q16394 746 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 DHRS13Q6UX07 377 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 ZNF525Q8N782 197 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 GMPPAQ96IJ6 420 aaPredicted RBP7.99□□□□□ -1.13
COL28A1-201ENST00000399429 COX11Q9Y6N1 276 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 A6NDN8 102 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 OR5B21A6NL26 309 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 ISLRO14498 428 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 TAS2R45P59539 299 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 SAMD13Q5VXD3 122 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 PQLC2Q6ZP29 291 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 C19orf35Q6ZS72 473 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 YRDCQ86U90 279 aaKnown RBP7.99□□□□□ -1.13
COL28A1-201ENST00000399429 DOLPP1Q86YN1 238 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 CYYR1Q96J86 154 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 MAP1LC3CQ9BXW4 147 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 A0A1B0GX78 115 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 ODAMA1E959 279 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 TNFSF11O14788 317 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 LILRA1O75019 489 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 ARL14EPLP0DKL9 152 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 CSRP1P21291 193 aaKnown RBP7.99□□□□□ -1.13
COL28A1-201ENST00000399429 CAPZBP47756 277 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 NPBWR2P48146 333 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 ZNF137PP52743 207 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 UBE2NP61088 152 aaKnown RBP7.99□□□□□ -1.13
COL28A1-201ENST00000399429 MRPL49Q13405 166 aaKnown RBP7.99□□□□□ -1.13
COL28A1-201ENST00000399429 PRSS8Q16651 343 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 COX19Q49B96 90 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 TMEM196Q5HYL7 178 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 C1orf174Q8IYL3 243 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 NHLRC2Q8NBF2 726 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 OR1L3Q8NH93 324 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 TAAR3PQ9P1P4 343 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 PEF1Q9UBV8 284 aaKnown RBP7.99□□□□□ -1.13
COL28A1-201ENST00000399429 RARRES3Q9UL19 164 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 TCFL5Q9UL49 500 aa7.99□□□□□ -1.13
COL28A1-201ENST00000399429 SH2D1BO14796 132 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 CXorf1O96002 111 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 OR1D5P58170 312 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 RPL31P62899 125 aaKnown RBP7.98□□□□□ -1.13
COL28A1-201ENST00000399429 ID3Q02535 119 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 AESQ08117 197 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 PRDX4Q13162 271 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 IL15RAQ13261 267 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 RAB35Q15286 201 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 FAM89BQ8N5H3 189 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 RPP25LQ8N5L8 163 aaKnown RBP7.98□□□□□ -1.13
COL28A1-201ENST00000399429 TEX50A0A1B0GTY4 177 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 A0A1B0GV72 72 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 IGHV3-13P01766 116 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 IGHV3-7P01780 117 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 HLA-DQA1P01909 254 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 CD1BP29016 333 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 MAS1LP35410 378 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 PRRX1P54821 245 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 UCP2P55851 309 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 HYAL1Q12794 435 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 OCIAD2Q56VL3 154 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 Q6ZWC4 215 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 FGFRL1Q8N441 504 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 MBD3L1Q8WWY6 194 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 GALMQ96C23 342 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 ZNF488Q96MN9 340 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 DERL1Q9BUN8 251 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 SSBP3Q9BWW4 388 aaPredicted RBP7.98□□□□□ -1.13
COL28A1-201ENST00000399429 CST9LQ9H4G1 147 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 FNDC4Q9H6D8 234 aaPredicted RBP7.98□□□□□ -1.13
COL28A1-201ENST00000399429 GPR35Q9HC97 309 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 IL36RNQ9UBH0 155 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 RLFQ13129 1914 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 TET1Q8NFU7 2136 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 A0A0U1RQV5 110 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 SCO2A0A1W2PP80 73 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 A0A1W2PQD3 144 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 ACSF3Q4G176 576 aaPredicted RBP7.98□□□□□ -1.13
COL28A1-201ENST00000399429 SPATA46Q5T0L3 261 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 ZNF324BQ6AW86 544 aaPredicted RBP7.98□□□□□ -1.13
COL28A1-201ENST00000399429 ZNF841Q6ZN19 808 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 FA2HQ7L5A8 372 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 C5orf24Q7Z6I8 188 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 RBMXL3Q8N7X1 1067 aaKnown RBP7.98□□□□□ -1.13
COL28A1-201ENST00000399429 HSD17B10Q99714 261 aaKnown RBP7.98□□□□□ -1.13
COL28A1-201ENST00000399429 SLC45A2Q9UMX9 530 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 ARHGEF17Q96PE2 2063 aaPredicted RBP7.98□□□□□ -1.13
COL28A1-201ENST00000399429 SERTM2A0A1B0GWG4 89 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 PPIAL4DF5H284 164 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 LEPROTL1O95214 131 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 TDGF1P13385 188 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 PLGLB1Q02325 96 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 MPV17L2Q567V2 206 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 C9orf50Q5SZB4 431 aa7.98□□□□□ -1.13
COL28A1-201ENST00000399429 IBA57Q5T440 356 aaKnown RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms