RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 FCGR2BP31994 310 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 GPR82Q96P67 336 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 SIPA1L3O60292 1781 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 TRGC1P0CF51 173 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 SNRPD3P62318 126 aaKnown RBP11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 LIMS2Q7Z4I7 341 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 GEMIN7Q9H840 131 aaKnown RBP11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 ATG2BQ96BY7 2078 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 ZNF831Q5JPB2 1677 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 NDUFB4O95168 129 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 OR2H2O95918 312 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 C2orf83Q53S99 150 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 ALKBH7Q9BT30 221 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 LAMB2P55268 1798 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 OTOFQ9HC10 1997 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 MPV17P39210 176 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 CYB561D1Q8N8Q1 229 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 EEF1AKMT3Q96AZ1 226 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 NHSL1Q5SYE7 1610 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 DLEC1Q9Y238 1755 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 A0A1W2PPV9 198 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 RCC1P18754 421 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 SLC25A53Q5H9E4 307 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 TMEM136Q6ZRR5 245 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 ZNF488Q96MN9 340 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 GUCD1Q96NT3 240 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 HSPB9Q9BQS6 159 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 TRIP12Q14669 1992 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 DNAL4O96015 105 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 NGFRP08138 427 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 FSTP19883 344 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 PSG4Q00888 419 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 ZNF385AQ96PM9 386 aaKnown RBP11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 PMCHL2Q9BQD1 86 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 DDA1Q9BW61 102 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 LRP5O75197 1615 aa11.07□□□□□ -0.64
CCDC88C-204ENST00000389857 C5orf67F2Z3F1 127 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 TMEM30BQ3MIR4 351 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 ARL6IP6Q8N6S5 226 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 MRPS18BQ9Y676 258 aaKnown RBP11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 DOCK5Q9H7D0 1870 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 IGKV3D-11A0A0A0MRZ8 115 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 IGKV3-11P04433 115 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 OR4B1Q8NGF8 309 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 CISD1Q9NZ45 108 aaKnown RBP11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 PGPA6NDG6 321 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A10PA6NDY2 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A18PA6NE21 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A16PA6NEW6 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A20PA6NIJ5 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A8PA6NJQ4 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A7PA6NKC0 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A22PA8MWA6 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A12PA8MX19 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A5PA8MXJ8 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A23PA8MXZ1 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 GPX1P07203 203 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A15PP0C7V4 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A13PP0C7W8 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A14PP0C7W9 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM90A24PP0C7X0 464 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 PAPPA-AS1Q5QFB9 102 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 DCTN5Q9BTE1 182 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 ALX4Q9H161 411 aaPredicted RBP11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 PRSS23O95084 383 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 CTSSP25774 331 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 HCP5Q6MZN7 132 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 PQLC2Q6ZP29 291 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 TCF24Q7RTU0 167 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 KCNAB3O43448 404 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 UPK3AO75631 287 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 LEPROTL1O95214 131 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 PRSS2P07478 247 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 CDX1P47902 265 aaPredicted RBP11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 CCL19Q99731 98 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 TMEM222Q9H0R3 208 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 MEGF10Q96KG7 1140 aa11.06□□□□□ -0.64
CCDC88C-204ENST00000389857 HSPB1P04792 205 aaKnown RBP11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 ZNF56Q15929 161 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 RTN4RQ9BZR6 473 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 HOXB1P14653 301 aaPredicted RBP11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 TMEM177Q53S58 311 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 IGSF11Q5DX21 431 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 OVCH2Q7RTZ1 564 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 TMEM101Q96IK0 257 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 KIR2DL4Q99706 377 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 CHODLQ9H9P2 273 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 DNAJC4Q9NNZ3 241 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 TUBD1Q9UJT1 453 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 SSTR5P35346 364 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 EFNB2P52799 333 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 OR10AG1Q8NH19 301 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 ITLN1Q8WWA0 313 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 ATXN7O15265 892 aaPredicted RBP11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 PF4P02776 101 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 SMRP1Q8NCR6 262 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 C19orf24Q9BVV8 132 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 MRPL18Q9H0U6 180 aaKnown RBP11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 NAT2P11245 290 aa11.05□□□□□ -0.64
CCDC88C-204ENST00000389857 PDLIM4P50479 330 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms