RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 LINC00052Q96N35 136 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 OR8B2Q96RD0 313 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 PLEKHA2Q9HB19 425 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 DCAF16Q9NXF7 216 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 OR1A1Q9P1Q5 309 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 OR14J1Q9UGF5 321 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 TRAV39A0A0B4J263 110 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 DUXBA0A1W2PPF3 345 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 KRBOX1C9JBD0 128 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 H0Y980 276 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 ST8SIA3O43173 380 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 FGF16O43320 207 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 LMO1P25800 156 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 UCP1P25874 307 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 S100GP29377 79 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 CEBPDP49716 269 aaPredicted RBP8.42□□□□□ -1.06
VPS53-202ENST00000389040 EIF5AP63241 154 aaKnown RBP8.42□□□□□ -1.06
VPS53-202ENST00000389040 RPL7L1Q6DKI1 246 aaKnown RBP8.42□□□□□ -1.06
VPS53-202ENST00000389040 PRR18Q8N4B5 295 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 ZNF561Q8N587 486 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 TEX29Q8N6K0 151 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 OR4D5Q8NGN0 318 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 SDSLQ96GA7 329 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 GPHA2Q96T91 129 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 FAM234AQ9H0X4 552 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 OR2S2Q9NQN1 319 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 MBNL3Q9NUK0 354 aaKnown RBP8.42□□□□□ -1.06
VPS53-202ENST00000389040 TRAV20A0A0B4J274 112 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 TMEM30CPA0ZSE6 113 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 NKX6-3A6NJ46 265 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 WNT9BO14905 357 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 TNFSF12O43508 249 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 PGLYRP1O75594 196 aaPredicted RBP8.42□□□□□ -1.06
VPS53-202ENST00000389040 CRYZL1O95825 349 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 LIPFP07098 398 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 HMGN3Q15651 99 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 ZNF788Q6ZQV5 615 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 OR10V1Q8NGI7 309 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 OR5D13Q8NGL4 314 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 RNF141Q8WVD5 230 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 SPIN2AQ99865 258 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 SPIN2BQ9BPZ2 258 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 TAF9BQ9HBM6 251 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 FBXL17Q9UF56 701 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 POMT1Q9Y6A1 747 aa8.42□□□□□ -1.06
VPS53-202ENST00000389040 MAP1AP78559 2803 aaPredicted RBP8.41□□□□□ -1.06
VPS53-202ENST00000389040 ITPR3Q14573 2671 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 SIGLEC5O15389 551 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 TMPRSS2O15393 492 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 CD5LO43866 347 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 PSPNO60542 156 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 GAPDHP04406 335 aaKnown RBP8.41□□□□□ -1.06
VPS53-202ENST00000389040 MSMBP08118 114 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 IGHV4-31P0DP07 118 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 PSG2P11465 335 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 EGR1P18146 543 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 F2RP25116 425 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 PRDX2P32119 198 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 P2RY1P47900 373 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 DVL1P1P54792 670 aaPredicted RBP8.41□□□□□ -1.06
VPS53-202ENST00000389040 LRRC10Q5BKY1 277 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 EIF5AL1Q6IS14 154 aaKnown RBP8.41□□□□□ -1.06
VPS53-202ENST00000389040 CIARTQ8N365 385 aaPredicted RBP8.41□□□□□ -1.06
VPS53-202ENST00000389040 BOLLQ8N9W6 283 aaKnown RBP8.41□□□□□ -1.06
VPS53-202ENST00000389040 DEFB108BQ8NET1 73 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 PPP1R35Q8TAP8 253 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 IL22RA2Q969J5 263 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 SSBP3Q9BWW4 388 aaPredicted RBP8.41□□□□□ -1.06
VPS53-202ENST00000389040 NARFLQ9H6Q4 476 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 TMEM160Q9NX00 188 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 TAS2R3Q9NYW6 316 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 CLN8Q9UBY8 286 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 NUP50Q9UKX7 468 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 VPS13CQ709C8 3753 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 PIGBOS1A0A0B4J2F0 54 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 HSPA12AO43301 675 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 ADAM20O43506 726 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 NDUFB3O43676 98 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 GPR137BO60478 399 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 JTBO76095 146 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 VDAC1P21796 283 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 CD80P33681 288 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 GNB2P62879 340 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 GNMTQ14749 295 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 NMSQ5H8A3 153 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 FAM201AQ5SY85 155 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 GPR157Q5UAW9 335 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 ZNF841Q6ZN19 808 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 DMBX1Q8NFW5 382 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 KCNIP1Q9NZI2 227 aa8.41□□□□□ -1.06
VPS53-202ENST00000389040 RCL1Q9Y2P8 373 aaKnown RBP8.41□□□□□ -1.06
VPS53-202ENST00000389040 IGKV1D-17A0A075B6S4 117 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 J3QLI3 93 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 SMAD7O15105 426 aaKnown RBP8.4□□□□□ -1.06
VPS53-202ENST00000389040 SCO1O75880 301 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 IGLV2-14P01704 120 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 GYPAP02724 150 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 FAM157CP0CG43 387 aa8.4□□□□□ -1.06
VPS53-202ENST00000389040 NKX2-1P43699 371 aaPredicted RBP8.4□□□□□ -1.06
VPS53-202ENST00000389040 HOXA4Q00056 320 aaPredicted RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms