RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 ATP5G2Q06055 141 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 C10orf111Q8N326 155 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 CADM4Q8NFZ8 388 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 PGLYRP3Q96LB9 341 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 RARRES2Q99969 163 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 JPT2Q9H910 190 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 A0A1B0GTH9 108 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 IGKV3-20P01619 116 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 MMP9P14780 707 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 CCL8P80075 99 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 FAM71F2Q6NXP2 309 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 IL20Q9NYY1 176 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 R4GN57 208 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 COL6A6A6NMZ7 2263 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 SLC17A3O00476 420 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 LSM6P62312 80 aaKnown RBP9.29□□□□□ -0.92
RTN3-206ENST00000377819 ADAD2Q8NCV1 583 aaKnown RBP9.29□□□□□ -0.92
RTN3-206ENST00000377819 SYT11Q9BT88 431 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 METTL1Q9UBP6 276 aaKnown RBP9.29□□□□□ -0.92
RTN3-206ENST00000377819 HSF4Q9ULV5 492 aa9.29□□□□□ -0.92
RTN3-206ENST00000377819 ZBTB42B2RXF5 422 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 NKX2-2O95096 273 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 SNRPCP09234 159 aaKnown RBP9.28□□□□□ -0.92
RTN3-206ENST00000377819 SPATA45Q537H7 98 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 TMEM177Q53S58 311 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 UBE2DNLQ8IWF7 75 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 VKORC1L1Q8N0U8 176 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 RNASEH2CQ8TDP1 164 aaKnown RBP9.28□□□□□ -0.92
RTN3-206ENST00000377819 MS4A6AQ9H2W1 248 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 CST9LQ9H4G1 147 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 TMEM272A0A1B0GTI8 110 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 RPL8P62917 257 aaKnown RBP9.28□□□□□ -0.92
RTN3-206ENST00000377819 RAE1P78406 368 aaKnown RBP9.28□□□□□ -0.92
RTN3-206ENST00000377819 KRTCAP3Q53RY4 240 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 CGB2Q6NT52 195 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 OR8B12Q8NGG6 310 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 TMEM45BQ96B21 275 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 PIMREGQ9BSJ6 248 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 PEF1Q9UBV8 284 aaKnown RBP9.28□□□□□ -0.92
RTN3-206ENST00000377819 NPIPB8E9PQR5 432 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 NPIPB9F8W1W9 429 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 SLC25A17O43808 307 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 NPIPB7O75200 414 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 ASIPP42127 132 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 GUSBP11Q6P575 273 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 H1FOOQ8IZA3 346 aaPredicted RBP9.28□□□□□ -0.92
RTN3-206ENST00000377819 OR2H1Q9GZK4 316 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 PDLIM7Q9NR12 457 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 SLC6A13Q9NSD5 602 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 HCSTQ9UBK5 93 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 SIPA1L1O43166 1804 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 PRRT4C9JH25 899 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 CTAG2O75638 210 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 NAPSAO96009 420 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 GALP22466 123 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 FGF9P31371 208 aaPredicted RBP9.28□□□□□ -0.92
RTN3-206ENST00000377819 STPG2Q8N412 459 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 ZNF430Q9H8G1 570 aaPredicted RBP9.28□□□□□ -0.92
RTN3-206ENST00000377819 SIGLEC7Q9Y286 467 aa9.28□□□□□ -0.92
RTN3-206ENST00000377819 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.27□□□□□ -0.921e-8■■■■□ 24
RTN3-206ENST00000377819 C19orf67A6NJJ6 358 aa9.27□□□□□ -0.92
RTN3-206ENST00000377819 ATXN7O15265 892 aaPredicted RBP9.27□□□□□ -0.92
RTN3-206ENST00000377819 SEC11BP0C7V7 166 aa9.27□□□□□ -0.92
RTN3-206ENST00000377819 TM4SF4P48230 202 aa9.27□□□□□ -0.92
RTN3-206ENST00000377819 TSPO2Q5TGU0 170 aa9.27□□□□□ -0.92
RTN3-206ENST00000377819 HCP5Q6MZN7 132 aa9.27□□□□□ -0.92
RTN3-206ENST00000377819 AMER3Q8N944 861 aa9.27□□□□□ -0.92
RTN3-206ENST00000377819 NUBPLQ8TB37 319 aa9.27□□□□□ -0.92
RTN3-206ENST00000377819 SMOC1Q9H4F8 434 aa9.27□□□□□ -0.92
RTN3-206ENST00000377819 TMEM160Q9NX00 188 aa9.27□□□□□ -0.92
RTN3-206ENST00000377819 ANAPC10Q9UM13 185 aa9.27□□□□□ -0.92
RTN3-206ENST00000377819 RND2P52198 227 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 SH2D5Q6ZV89 423 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 ZNF784Q8NCA9 323 aaPredicted RBP9.27□□□□□ -0.93
RTN3-206ENST00000377819 OR4X2Q8NGF9 303 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 OR51G1Q8NGK1 321 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 OR1P1Q8NH06 330 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 ITLN2Q8WWU7 325 aaPredicted RBP9.27□□□□□ -0.93
RTN3-206ENST00000377819 LHX9Q9NQ69 397 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 PXMP4Q9Y6I8 212 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 TRAV8-2A0A0B4J237 113 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 APOMO95445 188 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 CEACAM5P06731 702 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 FCARP24071 287 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 RBM11P57052 281 aaKnown RBP9.27□□□□□ -0.93
RTN3-206ENST00000377819 EWSR1Q01844 656 aaKnown RBP eCLIP9.27□□□□□ -0.93
RTN3-206ENST00000377819 TMEM196Q5HYL7 178 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 LEMD1Q68G75 181 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 KLHDC9Q8NEP7 349 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 KCNS1Q96KK3 526 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 C21orf140B9A014 251 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 PPM1DO15297 605 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 SRSF5Q13243 272 aaKnown RBP9.27□□□□□ -0.93
RTN3-206ENST00000377819 OR2Y1Q8NGV0 311 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 FRRS1LQ9P0K9 344 aa9.27□□□□□ -0.93
RTN3-206ENST00000377819 MVDP53602 400 aa9.26□□□□□ -0.93
RTN3-206ENST00000377819 ACVR1Q04771 509 aa9.26□□□□□ -0.93
RTN3-206ENST00000377819 NT5CQ8TCD5 201 aa9.26□□□□□ -0.93
RTN3-206ENST00000377819 FAM216AQ8WUB2 273 aa9.26□□□□□ -0.93
RTN3-206ENST00000377819 ZNF414Q96IQ9 312 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms