RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 POM121L2Q96KW2 1035 aa17.82■□□□□ 0.44
UPF3A-202ENST00000375299 SNHG12Q9BXW3 62 aa17.82■□□□□ 0.44
UPF3A-202ENST00000375299 ARHGAP21Q5T5U3 1957 aa17.82■□□□□ 0.44
UPF3A-202ENST00000375299 PMS2P5A8MQ11 134 aa17.82■□□□□ 0.44
UPF3A-202ENST00000375299 IL3RAP26951 378 aa17.82■□□□□ 0.44
UPF3A-202ENST00000375299 TFF3Q07654 80 aa17.82■□□□□ 0.44
UPF3A-202ENST00000375299 TEX38Q6PEX7 206 aa17.82■□□□□ 0.44
UPF3A-202ENST00000375299 FIP1L1Q6UN15 594 aaKnown RBP17.82■□□□□ 0.44
UPF3A-202ENST00000375299 A0A1W2PR80 420 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 PINLYPA6NC86 204 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 SIRPB1O00241 398 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 MLNRO43193 412 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 CHRNA7P36544 502 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 FAM78BQ5VT40 261 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 FKBP11Q9NYL4 201 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 CLN8Q9UBY8 286 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 C1QTNF9BB2RNN3 333 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 SYNGR4O95473 234 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 NPPCP23582 126 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 ERVFC1-1P60608 527 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 RPL15P61313 204 aaKnown RBP17.81■□□□□ 0.44
UPF3A-202ENST00000375299 PMP22Q01453 160 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 MSMO1Q15800 293 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 OR5T1Q8NG75 326 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 NPCDR1Q9BY65 106 aa17.81■□□□□ 0.44
UPF3A-202ENST00000375299 C11orf94C9JXX5 98 aa17.8■□□□□ 0.44
UPF3A-202ENST00000375299 J3QT63 122 aa17.8■□□□□ 0.44
UPF3A-202ENST00000375299 CFIP05156 583 aa17.8■□□□□ 0.44
UPF3A-202ENST00000375299 OR10P1Q8NGE3 313 aa17.8■□□□□ 0.44
UPF3A-202ENST00000375299 WFIKKN1Q96NZ8 548 aa17.8■□□□□ 0.44
UPF3A-202ENST00000375299 ATG101Q9BSB4 218 aa17.8■□□□□ 0.44
UPF3A-202ENST00000375299 PLA2G3Q9NZ20 509 aa17.8■□□□□ 0.44
UPF3A-202ENST00000375299 PPP1CBP62140 327 aa17.8■□□□□ 0.44
UPF3A-202ENST00000375299 TUSC5Q8IXB3 177 aa17.8■□□□□ 0.44
UPF3A-202ENST00000375299 IFNL4K9M1U5 179 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 OR2H2O95918 312 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 SCGB1D1O95968 90 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 P0C879 139 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 ARR3P36575 388 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 Q0VFX4 171 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 C1orf194Q5T5A4 169 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 CBLN4Q9NTU7 201 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 TRAPPC1Q9Y5R8 145 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 KIR2DL5BA0A0G2JN68 375 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 KIR2DL5BA0A0G2JPC4 375 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 ODAMA1E959 279 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 LRRC30A6NM36 301 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 NTN3O00634 580 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-202ENST00000375299 GALR2O43603 387 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-202ENST00000375299 RAMP3O60896 148 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 CD99P14209 185 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 G6PCP35575 357 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 IGFBP7Q16270 282 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 TMEM144Q7Z5S9 345 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 LINC01551Q86U37 167 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 KIR2DL5AQ8N109 375 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 ZNF709Q8N972 641 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 BTF3L4Q96K17 158 aa17.79■□□□□ 0.44
UPF3A-202ENST00000375299 MBNL3Q9NUK0 354 aaKnown RBP17.79■□□□□ 0.44
UPF3A-202ENST00000375299 POLR3KQ9Y2Y1 108 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-202ENST00000375299 A0A0U1RQK1 487 aa17.78■□□□□ 0.44
UPF3A-202ENST00000375299 ZNF320A2RRD8 509 aa17.78■□□□□ 0.44
UPF3A-202ENST00000375299 M0R143 59 aa17.78■□□□□ 0.44
UPF3A-202ENST00000375299 PDGFBP01127 241 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-202ENST00000375299 CA6P23280 308 aa17.78■□□□□ 0.44
UPF3A-202ENST00000375299 MPLP40238 635 aa17.78■□□□□ 0.44
UPF3A-202ENST00000375299 PLP2Q04941 152 aa17.78■□□□□ 0.44
UPF3A-202ENST00000375299 SRYQ05066 204 aa17.78■□□□□ 0.44
UPF3A-202ENST00000375299 KRASP01116 189 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 CDC34P49427 236 aaPredicted RBP17.77■□□□□ 0.44
UPF3A-202ENST00000375299 VWC2Q2TAL6 325 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 ZNF645Q8N7E2 425 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 WDYHV1Q96HA8 205 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.77■□□□□ 0.44
UPF3A-202ENST00000375299 RYDENQ9NUL5 291 aaKnown RBP17.77■□□□□ 0.44
UPF3A-202ENST00000375299 WIPI2Q9Y4P8 454 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 PXMP4Q9Y6I8 212 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 TNRC18O15417 2968 aaPredicted RBP17.77■□□□□ 0.44
UPF3A-202ENST00000375299 TMPRSS2O15393 492 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 ZG16O60844 167 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 WNT5AP41221 380 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 ZNF816Q0VGE8 651 aaPredicted RBP17.77■□□□□ 0.44
UPF3A-202ENST00000375299 TRA2AQ13595 282 aaKnown RBP eCLIP17.77■□□□□ 0.441e-9■■■■□ 26.1
UPF3A-202ENST00000375299 OR1L1Q8NH94 360 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 DTD1Q8TEA8 209 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 OR51B6Q9H340 312 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 NAGKQ9UJ70 344 aa17.77■□□□□ 0.44
UPF3A-202ENST00000375299 TMEM265A0A087WTH1 108 aa17.76■□□□□ 0.43
UPF3A-202ENST00000375299 C17orf112F2Z3M2 114 aa17.76■□□□□ 0.43
UPF3A-202ENST00000375299 DEFA4P12838 97 aa17.76■□□□□ 0.43
UPF3A-202ENST00000375299 RPS16P62249 146 aaKnown RBP17.76■□□□□ 0.43
UPF3A-202ENST00000375299 GNB1P62873 340 aa17.76■□□□□ 0.43
UPF3A-202ENST00000375299 NUFIP2Q7Z417 695 aaKnown RBP17.76■□□□□ 0.43
UPF3A-202ENST00000375299 PPP1R32Q7Z5V6 425 aa17.76■□□□□ 0.43
UPF3A-202ENST00000375299 ZBTB34Q8NCN2 500 aa17.76■□□□□ 0.43
UPF3A-202ENST00000375299 IMMP2LQ96T52 175 aa17.76■□□□□ 0.43
UPF3A-202ENST00000375299 PDE6DO43924 150 aa17.76■□□□□ 0.43
UPF3A-202ENST00000375299 OTX2P32243 289 aa17.76■□□□□ 0.43
UPF3A-202ENST00000375299 MAFAQ8NHW3 353 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-202ENST00000375299 TMEM210A6NLX4 147 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms