RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 C1QTNF12Q5T7M4 302 aa8.12□□□□□ -1.11
VPS13A-203ENST00000360280 SAPCD1Q5SSQ6 148 aa8.12□□□□□ -1.11
VPS13A-203ENST00000360280 SNRPD3P62318 126 aaKnown RBP8.12□□□□□ -1.11
VPS13A-203ENST00000360280 TUBD1Q9UJT1 453 aa8.12□□□□□ -1.11
VPS13A-203ENST00000360280 STRCP1A6NGW2 1772 aa8.12□□□□□ -1.11
VPS13A-203ENST00000360280 MC5RP33032 325 aa8.12□□□□□ -1.11
VPS13A-203ENST00000360280 SF3B5Q9BWJ5 86 aaKnown RBP8.12□□□□□ -1.11
VPS13A-203ENST00000360280 ZFP64Q9NPA5 681 aa8.12□□□□□ -1.11
VPS13A-203ENST00000360280 ARL14EPLP0DKL9 152 aa8.12□□□□□ -1.11
VPS13A-203ENST00000360280 GFRA1P56159 465 aa8.12□□□□□ -1.11
VPS13A-203ENST00000360280 SLC25A10Q9UBX3 287 aaPredicted RBP8.12□□□□□ -1.11
VPS13A-203ENST00000360280 RPL36A-HNRNPH2H7BZ11 118 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 ID4P47928 161 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 NPFFO15130 113 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 F12P00748 615 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-203ENST00000360280 CX3CL1P78423 397 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 PRSS27Q9BQR3 290 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 CLDN16Q9Y5I7 305 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 PIGYQ3MUY2 71 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 TMEM222Q9H0R3 208 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 KIAA2026Q5HYC2 2103 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 DMKNQ6E0U4 476 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-203ENST00000360280 RAX2Q96IS3 184 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 LRRC61Q9BV99 259 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 SSBP4Q9BWG4 385 aaPredicted RBP8.11□□□□□ -1.11
VPS13A-203ENST00000360280 A0A1W2PR80 420 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 EML2O95834 649 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 ATOH7Q8N100 152 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 GUCA2BQ16661 112 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 MRPL24Q96A35 216 aaKnown RBP8.11□□□□□ -1.11
VPS13A-203ENST00000360280 OGG1O15527 345 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 RPL8P62917 257 aaKnown RBP8.11□□□□□ -1.11
VPS13A-203ENST00000360280 MESTQ5EB52 335 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 SLC6A13Q9NSD5 602 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 CDIPTO14735 213 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 SOCS1O15524 211 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 ZNF250P15622 560 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 TRBV20OR9-2A0A075B6H5 130 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 TCRBV5S1A1TA0A578 114 aa8.11□□□□□ -1.11
VPS13A-203ENST00000360280 RAE1P78406 368 aaKnown RBP8.11□□□□□ -1.11
VPS13A-203ENST00000360280 MBNL2Q5VZF2 373 aaKnown RBP8.11□□□□□ -1.11
VPS13A-203ENST00000360280 PUSL1Q8N0Z8 303 aaKnown RBP8.11□□□□□ -1.11
VPS13A-203ENST00000360280 FAM90A27PA6NNH2 459 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 NXPH1P58417 271 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 TMEM170BQ5T4T1 132 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 C10orf111Q8N326 155 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 TTC9CQ8N5M4 171 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 GNRHR2Q96P88 292 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 FAM186AA6NE01 2351 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 FAM159AQ6UWV7 190 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 KCNS1Q96KK3 526 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 FAM106CPP0CH98 169 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 CKS1BP61024 79 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 ZNF793Q6ZN11 406 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 GLIPR1P48060 266 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 MEX3AA1L020 520 aaKnown RBP8.1□□□□□ -1.11
VPS13A-203ENST00000360280 ATP5LO75964 103 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 HOGA1Q86XE5 327 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 CITED2Q99967 270 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-203ENST00000360280 ZNF576Q9H609 170 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 HMGA2P52926 109 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 MFAP4P55083 255 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 RPL31P62899 125 aaKnown RBP8.1□□□□□ -1.11
VPS13A-203ENST00000360280 TRBV7-9A0A0J9YWB2 115 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 LINC00869P0C866 280 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 NKG7Q16617 165 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 DNASE2BQ8WZ79 361 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 SRFP11831 508 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 OTX1P32242 354 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-203ENST00000360280 GALNSP34059 522 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 PHF7Q9BWX1 381 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-203ENST00000360280 IGKV3D-15A0A087WSY6 115 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 KLK10O43240 276 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 IGKV3-15P01624 115 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 GPX1P07203 203 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 TNFRSF19Q9NS68 423 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 SHISA8B8ZZ34 492 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 PRR13Q9NZ81 148 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 WFDC3Q8IUB2 231 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 ALX4Q9H161 411 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-203ENST00000360280 KLK15Q9H2R5 256 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 PRKNO60260 465 aaPredicted RBP8.1□□□□□ -1.11
VPS13A-203ENST00000360280 GDF9O60383 454 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 VAX1Q5SQQ9 334 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 MRPL32Q9BYC8 188 aaKnown RBP8.1□□□□□ -1.11
VPS13A-203ENST00000360280 TMEM160Q9NX00 188 aa8.1□□□□□ -1.11
VPS13A-203ENST00000360280 RBM11P57052 281 aaKnown RBP8.09□□□□□ -1.11
VPS13A-203ENST00000360280 PSG6Q00889 435 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 TRAV8-2A0A0B4J237 113 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 FAM90A26D6RGX4 464 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 MGAT2Q10469 447 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 PRRT4C9JH25 899 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 ERGP11308 486 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 SPSB4Q96A44 273 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 FSCN3Q9NQT6 498 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 C7orf66A4D0T2 115 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 HMGA1P17096 107 aaKnown RBP8.09□□□□□ -1.11
VPS13A-203ENST00000360280 CEACAM5P06731 702 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 PQLC2LA1A4F0 135 aa8.09□□□□□ -1.11
VPS13A-203ENST00000360280 ASPDHA6ND91 283 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms