RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 FCGR3AP08637 254 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 SMAD2Q15796 467 aaKnown RBP11.03□□□□□ -0.64
COL6A3-203ENST00000353578 ZNF77Q15935 545 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 DEFB118Q96PH6 123 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 RNF122Q9H9V4 155 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 LTBP4Q8N2S1 1624 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 SAMD5Q5TGI4 173 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 TMEM91Q6ZNR0 172 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 C10orf111Q8N326 155 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 STPG3Q8N7X2 389 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 AMER3Q8N944 861 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 GPR132Q9UNW8 380 aa11.03□□□□□ -0.64
COL6A3-203ENST00000353578 IGLV3-27P01718 113 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 ERVK11-1P61568 191 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 LAMTOR1Q6IAA8 161 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 ZNF774Q6NX45 483 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 MMP23AO75900 390 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 PPBPP02775 128 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 CLDN2P57739 230 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 CEACAM16Q2WEN9 425 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 LRTM2Q8N967 370 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 OR4D5Q8NGN0 318 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 TMEM40Q8WWA1 233 aa11.02□□□□□ -0.64
COL6A3-203ENST00000353578 TMEM177Q53S58 311 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 SPACA9Q96E40 222 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-203ENST00000353578 SPANXN1Q5VSR9 72 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 DLX4Q92988 240 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-203ENST00000353578 FFAR1O14842 300 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 IQCF3P0C7M6 154 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 TNFRSF12AQ9NP84 129 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 IL2RAP01589 272 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 RHOGP84095 191 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 ADAD2Q8NCV1 583 aaKnown RBP11.02□□□□□ -0.65
COL6A3-203ENST00000353578 OR11H4Q8NGC9 324 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 ZNF418Q8TF45 676 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-203ENST00000353578 LTBP3Q9NS15 1303 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 GAGE12BA1L429 117 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 OCIAD2Q56VL3 154 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 PXMP4Q9Y6I8 212 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 HYPMO75409 117 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 SNAI1O95863 264 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-203ENST00000353578 ZNF260Q3ZCT1 412 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 C1orf100Q5SVJ3 147 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 DIRC2Q96SL1 478 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 SDK2Q58EX2 2172 aa11.02□□□□□ -0.65
COL6A3-203ENST00000353578 ORM2P19652 201 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 LYZL2Q7Z4W2 148 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 NYNRINQ9P2P1 1898 aaKnown RBP11.01□□□□□ -0.65
COL6A3-203ENST00000353578 C3orf80F5H4A9 247 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 FGF17O60258 216 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 FCGR3BO75015 233 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 PRDX2P32119 198 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 SSBP2P81877 361 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-203ENST00000353578 J3QR06 171 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 CD38P28907 300 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 AGERQ15109 404 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 GLRX5Q86SX6 157 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 ST6GALNAC2Q9UJ37 374 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 PNLIPP16233 465 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 LRRC75BQ2VPJ9 315 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 RAE1P78406 368 aaKnown RBP11.01□□□□□ -0.65
COL6A3-203ENST00000353578 TMEM252Q8N6L7 170 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 FMC1Q96HJ9 113 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 H3BRM9 83 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 F11P03951 625 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 SPEM1Q8N4L4 309 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 MISP3Q96FF7 219 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 SF3B5Q9BWJ5 86 aaKnown RBP11.01□□□□□ -0.65
COL6A3-203ENST00000353578 F8VVB4 439 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 F8VWA3 439 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 OR9G9P0C7N8 305 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 SRD5A2P31213 254 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 ID1P41134 155 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 TCTN1Q2MV58 587 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 FBXO46Q6PJ61 603 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-203ENST00000353578 NRN1Q9NPD7 142 aa11.01□□□□□ -0.65
COL6A3-203ENST00000353578 A0A1W2PQD3 144 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 PPP1CCP36873 323 aaKnown RBP11□□□□□ -0.65
COL6A3-203ENST00000353578 MYEOVQ96EZ4 313 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 G6PC2Q9NQR9 355 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 C1RLQ9NZP8 487 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 CRYAAP02489 173 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 ASAH2BP0C7U1 165 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 KIAA0040Q15053 153 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 RSPO3Q9BXY4 272 aaPredicted RBP11□□□□□ -0.65
COL6A3-203ENST00000353578 A0A1W2PP11 408 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 GABRG2P18507 467 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 CAPZBP47756 277 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 GVQW1Q8N7I0 195 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 KLK13Q9UKR3 277 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 SYNGR1O43759 233 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 TMEM101Q96IK0 257 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 ASB10Q8WXI3 467 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 DDNO94850 711 aaPredicted RBP11□□□□□ -0.65
COL6A3-203ENST00000353578 MC5RP33032 325 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 EMDP50402 254 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 C19orf48Q6RUI8 117 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 LRRC29Q8WV35 223 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 LPAR2Q9HBW0 351 aa11□□□□□ -0.65
COL6A3-203ENST00000353578 KCNE3Q9Y6H6 103 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms