RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SHISA3A0PJX4 238 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 FAM209AQ5JX71 171 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 ACP7Q6ZNF0 438 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 PNKDQ8N490 385 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 PERPQ96FX8 193 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 SLC31A2O15432 143 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 HCP5Q6MZN7 132 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 C9orf62Q8N4C0 152 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 OR9G1Q8NH87 305 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 ZNF716A6NP11 495 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 SLC25A17O43808 307 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 MUC1P15941 1255 aaPredicted RBP12.7□□□□□ -0.38
COL17A1-201ENST00000353479 NHLH2Q02577 135 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 CALHM1Q8IU99 346 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 FAM222BQ8WU58 562 aa12.7□□□□□ -0.38
COL17A1-201ENST00000353479 C7orf66A4D0T2 115 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 RBFOX3A6NFN3 312 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 EFNA2O43921 213 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 S100A8P05109 93 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 MMP7P09237 267 aaPredicted RBP12.69□□□□□ -0.38
COL17A1-201ENST00000353479 RPL8P62917 257 aaKnown RBP12.69□□□□□ -0.38
COL17A1-201ENST00000353479 LGALSLQ3ZCW2 172 aaPredicted RBP12.69□□□□□ -0.38
COL17A1-201ENST00000353479 REPIN1Q9BWE0 567 aaKnown RBP12.69□□□□□ -0.38
COL17A1-201ENST00000353479 TLNRD1Q9H1K6 362 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 MST1P26927 711 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 RNASE6Q93091 150 aaKnown RBP12.69□□□□□ -0.38
COL17A1-201ENST00000353479 STARD4Q96DR4 205 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 TICRRQ7Z2Z1 1910 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 LY6EQ16553 131 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 FGFRL1Q8N441 504 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 LILRB1Q8NHL6 650 aaPredicted RBP12.69□□□□□ -0.38
COL17A1-201ENST00000353479 TANC1Q9C0D5 1861 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 CLEC7AQ9BXN2 247 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 CLPSP04118 112 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 UNC119Q13432 240 aa12.69□□□□□ -0.38
COL17A1-201ENST00000353479 SMAD7O15105 426 aaKnown RBP12.68□□□□□ -0.38
COL17A1-201ENST00000353479 P2RY4P51582 365 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 WFDC3Q8IUB2 231 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 SEMA5BQ9P283 1151 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 RABAC1Q9UI14 185 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 TSC2P49815 1807 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 C11orf94C9JXX5 98 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 PF4V1P10720 104 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 SNRNP40Q96DI7 357 aaKnown RBP12.68□□□□□ -0.38
COL17A1-201ENST00000353479 MANBALQ9NQG1 85 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 J3KRW8 73 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 MFNGO00587 321 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 CD1BP29016 333 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 SPCS3P61009 180 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 MMD2Q8IY49 270 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 PI4KAP42356 2102 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 FOXH1O75593 365 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 LOXL3P58215 753 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 SLC35E4Q6ICL7 350 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 FAM216BQ8N7L0 139 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 DYNLRB2Q8TF09 96 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 TMEM140Q9NV12 185 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 OR5AC2Q9NZP5 309 aa12.68□□□□□ -0.38
COL17A1-201ENST00000353479 DOCK8Q8NF50 2099 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 GATCO43716 136 aaKnown RBP12.67□□□□□ -0.38
COL17A1-201ENST00000353479 ZP3P21754 424 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 FOXF2Q12947 444 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 ANKRD55Q3KP44 614 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 ZNF818PQ6ZRF7 136 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 TCTEX1D1Q8N7M0 179 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 TGOLN2O43493 480 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 WNT5AP41221 380 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 TNFSF18Q9UNG2 199 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 A0A1B0GTI1 187 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 CXorf66Q5JRM2 361 aaPredicted RBP12.67□□□□□ -0.38
COL17A1-201ENST00000353479 UNQ5815/PRO19632Q6UWF5 114 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 GPR146Q96CH1 333 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 RBKSQ9H477 322 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 ATP6V0CP27449 155 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 GALR1P47211 349 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 ZNF362Q5T0B9 420 aaPredicted RBP12.67□□□□□ -0.38
COL17A1-201ENST00000353479 DHRS7BQ6IAN0 325 aaPredicted RBP12.67□□□□□ -0.38
COL17A1-201ENST00000353479 C16orf82Q7Z2V1 217 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 C5orf66Q9H5L9 145 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 LCN2P80188 198 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 OVCH2Q7RTZ1 564 aa12.67□□□□□ -0.38
COL17A1-201ENST00000353479 SELENOHQ8IZQ5 122 aaKnown RBP12.67□□□□□ -0.38
COL17A1-201ENST00000353479 GAR1Q9NY12 217 aaKnown RBP12.67□□□□□ -0.38
COL17A1-201ENST00000353479 CEACAM18A8MTB9 384 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 PITX3O75364 302 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 GGNQ86UU5 652 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 GHITMQ9H3K2 345 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 E9PLN8 166 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 S1PR2O95136 353 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 CDKN1AP38936 164 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 LURAP1Q96LR2 239 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 LINC00052Q96N35 136 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 VKORC1Q9BQB6 163 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 IQCF6A8MYZ5 107 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 F5H697 171 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 VKORC1L1Q8N0U8 176 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 SIGLECL1Q8N7X8 197 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 MARCH11A6NNE9 402 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 OR2J3O76001 311 aa12.66□□□□□ -0.38
COL17A1-201ENST00000353479 PCSK4Q6UW60 755 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms