RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 KIR2DS4P43632 304 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 RPS10P46783 165 aaKnown RBP10.78□□□□□ -0.68
CLK3-201ENST00000345005 VAMP2P63027 116 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 KIR2DS1Q14954 304 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 PRAMEF6Q5VXH4 476 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 ZNF826PQ6ZT77 177 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 RAB24Q969Q5 203 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 TVP23CQ96ET8 276 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 TMEM56Q96MV1 263 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 NIPSNAP3BQ9BS92 247 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 TMEM242Q9NWH2 141 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 TAAR3PQ9P1P4 343 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 TMEM56-RWDD3S4R434 201 aa10.78□□□□□ -0.68
CLK3-201ENST00000345005 FAM208BQ5VWN6 2430 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 A0A1W2PPE3 182 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 DPRXA6NFQ7 191 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 TRDCB7Z8K6 153 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 SLC33A1O00400 549 aaPredicted RBP10.77□□□□□ -0.68
CLK3-201ENST00000345005 MPPED1O15442 326 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 DIRAS3O95661 229 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 OR13C7P0DN81 318 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 TAGLN2P37802 199 aaKnown RBP10.77□□□□□ -0.68
CLK3-201ENST00000345005 NKX2-1P43699 371 aaPredicted RBP10.77□□□□□ -0.68
CLK3-201ENST00000345005 OR2B8PP59922 312 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 UBE2KP61086 200 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 PNRC1Q12796 327 aaPredicted RBP10.77□□□□□ -0.68
CLK3-201ENST00000345005 LY6DQ14210 128 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 KHDC3LQ587J8 217 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 ZNF506Q5JVG8 444 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 ACP7Q6ZNF0 438 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 TMEM182Q6ZP80 229 aaPredicted RBP10.77□□□□□ -0.68
CLK3-201ENST00000345005 Q6ZPA2 131 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 HSD17B11Q8NBQ5 300 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 WFIKKN1Q96NZ8 548 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 NEU1Q99519 415 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 PUS1Q9Y606 427 aaKnown RBP eCLIP10.77□□□□□ -0.68
CLK3-201ENST00000345005 ATP23Q9Y6H3 246 aa10.77□□□□□ -0.68
CLK3-201ENST00000345005 ATRXP46100 2492 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 TRAV1-1A0A0B4J248 108 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 A0A1W2PPE2 198 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 CLEC18AA5D8T8 446 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 VSTM5A8MXK1 200 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 H3BQ15 152 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 SIRPB1O00241 398 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 PHF1O43189 567 aaPredicted RBP10.77□□□□□ -0.69
CLK3-201ENST00000345005 DFFBO76075 338 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 HAND1O96004 215 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 ARG1P05089 322 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 CTXN2P0C2S0 81 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 S100GP29377 79 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 CFHR2P36980 270 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 BSPH1Q075Z2 132 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 SMIM21Q3B7S5 101 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 FBXL19-AS1Q494R0 122 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 CLEC18CQ8NCF0 446 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 MRPL30Q8TCC3 161 aaKnown RBP10.77□□□□□ -0.69
CLK3-201ENST00000345005 IL22RA2Q969J5 263 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 SSX3Q99909 188 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 C20orf24Q9BUV8 137 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 MRPL37Q9BZE1 423 aaKnown RBP10.77□□□□□ -0.69
CLK3-201ENST00000345005 TMEM222Q9H0R3 208 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 LYRM2Q9NU23 88 aaPredicted RBP10.77□□□□□ -0.69
CLK3-201ENST00000345005 RNF150Q9ULK6 438 aa10.77□□□□□ -0.69
CLK3-201ENST00000345005 C3orf85A0A1B0GTC6 90 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 C3orf80F5H4A9 247 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 TSTD3H0UI37 97 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 SRP19P09132 144 aaKnown RBP10.76□□□□□ -0.69
CLK3-201ENST00000345005 NHLH2Q02577 135 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 AKR1C8PQ5T2L2 129 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 ZNF880Q6PDB4 577 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 MOB1BQ7L9L4 216 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 ZNF695Q8IW36 515 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 BEND2Q8NDZ0 799 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 PRR7Q8TB68 274 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 PARP12Q9H0J9 701 aaKnown RBP10.76□□□□□ -0.69
CLK3-201ENST00000345005 C11orf1Q9H5F2 150 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 OR14J1Q9UGF5 321 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 ZDHHC8Q9ULC8 765 aa10.76□□□□□ -0.69
CLK3-201ENST00000345005 TRBV23-1A0A0A0MS06 115 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 IFNL4K9M1U5 179 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 WNT9BO14905 357 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 TK1P04183 234 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 DAOP14920 347 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 TNFSF4P23510 183 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 ATP6V0CP27449 155 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 GLIPR1P48060 266 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 SP6Q3SY56 376 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 ANKRD39Q53RE8 183 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 KIAA2026Q5HYC2 2103 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 ZNF497Q6ZNH5 498 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 ZNF429Q86V71 674 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 FAM90A1Q86YD7 464 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 OR52M1Q8NGK5 317 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 LRRC29Q8WV35 223 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 RNASE6Q93091 150 aaKnown RBP10.75□□□□□ -0.69
CLK3-201ENST00000345005 MEGF10Q96KG7 1140 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 OR2V2Q96R30 315 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 LIME1Q9H400 295 aa10.75□□□□□ -0.69
CLK3-201ENST00000345005 UBE2J1Q9Y385 318 aaPredicted RBP10.75□□□□□ -0.69
CLK3-201ENST00000345005 SPRY3O43610 288 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms