RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 WDR38Q5JTN6 314 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 ATP5L2Q7Z4Y8 100 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 FER1L6Q2WGJ9 1857 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 SRIP30626 198 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 OR4C11Q6IEV9 310 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 CA13Q8N1Q1 262 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 OR10G7Q8NGN6 311 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 MS4A4AQ96JQ5 239 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 REPIN1Q9BWE0 567 aaKnown RBP3.55□□□□□ -1.84
NEDD4-201ENST00000338963 MRPL32Q9BYC8 188 aaKnown RBP3.55□□□□□ -1.84
NEDD4-201ENST00000338963 TTTY10Q9BZA0 68 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 TMEM222Q9H0R3 208 aa3.55□□□□□ -1.84
NEDD4-201ENST00000338963 TRAV27A0A087WT01 109 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 B9A039 149 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 SYS1-DBNDD2H3BUS1 97 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 CLEC3AO75596 197 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 KLF7O75840 302 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 FUT6P51993 359 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 PDCD1Q15116 288 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 TESK1Q15569 626 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 SCRT2Q9NQ03 307 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 KIR2DS5A0A0G2JLQ3 304 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 A0A0G2JNG1 304 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 MOSP00540 346 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 LMO2P25791 158 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 SPEM2Q0P670 501 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 FOXI1Q12951 378 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 KIR2DS5Q14953 304 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 FKBP1CQ5VVH2 108 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 SP8Q8IXZ3 490 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 GJD4Q96KN9 370 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 PDFQ9HBH1 243 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 WSB2Q9NYS7 404 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 SIPA1L1O43166 1804 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 CRXO43186 299 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 TIMP1P01033 207 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 ATP5G1P05496 136 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 ATP5G3P48201 142 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 ATP5J2P56134 94 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 LGALS4P56470 323 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 CX3CL1P78423 397 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 NTHL1P78549 312 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 ID3Q02535 119 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 ATP5G2Q06055 141 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 PQLC2Q6ZP29 291 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 Q6ZVH6 145 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 RCHY1Q96PM5 261 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 OR4C12Q96R67 309 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 PRSS27Q9BQR3 290 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 GP6Q9HCN6 339 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 HIGD1BQ9P298 99 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 FER1L4A9Z1Z3 1794 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 DOCK2Q92608 1830 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 GLI3P10071 1580 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 IZUMO1RA6ND01 250 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 C17orf51A8MQB3 221 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 GYPBP06028 91 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 PEBP1P30086 187 aaKnown RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 MFSD12Q6NUT3 480 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 TPRG1Q6ZUI0 275 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 DOT1LQ8TEK3 1739 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 C3orf85A0A1B0GTC6 90 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 F5H768 121 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 SOCS1O15524 211 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 LDB3O75112 727 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 DXOO77932 396 aaKnown RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 CD55P08174 381 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 ORM2P19652 201 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 RPS28P62857 69 aaKnown RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 POLR2LP62875 67 aaKnown RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 TAF10Q12962 218 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 PSG7Q13046 419 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 ASCL4Q6XD76 172 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 DOK3Q7L591 496 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 C2orf73Q8N5S3 287 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 TSKUQ8WUA8 353 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 SH2D2AQ9NP31 389 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 A0A1W2PPI3 338 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 SLC31A1O15431 190 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 GABRG2P18507 467 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 CBLN1P23435 193 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 KIR2DS2P43631 304 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 RELBQ01201 579 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 YAF2Q8IY57 180 aa3.54□□□□□ -1.84
NEDD4-201ENST00000338963 ZNF689Q96CS4 500 aaPredicted RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 MSI2Q96DH6 328 aaKnown RBP3.54□□□□□ -1.84
NEDD4-201ENST00000338963 IGLV3-16A0A075B6K0 115 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 DDTLA6NHG4 134 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 IGHV3-7P01780 117 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 CD33P20138 364 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 CSN1S1P47710 185 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 Q6ZUT4 128 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 SPATA12Q7Z6I5 190 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 ANKRD37Q7Z713 158 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 H1FXQ92522 213 aaKnown RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 CDX2Q99626 313 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 B4GALT7Q9UBV7 327 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 NXT1Q9UKK6 140 aaKnown RBP3.53□□□□□ -1.84
NEDD4-201ENST00000338963 KIAA1551Q9HCM1 1747 aa3.53□□□□□ -1.84
NEDD4-201ENST00000338963 SH2D1BO14796 132 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms