RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 C22orf34Q6ZV56 151 aa18.44■□□□□ 0.54
TPM4-201ENST00000300933 CMTM1Q8IZ96 169 aa18.44■□□□□ 0.54
TPM4-201ENST00000300933 SNIP1Q8TAD8 396 aaKnown RBP18.44■□□□□ 0.54
TPM4-201ENST00000300933 TMEM171Q8WVE6 324 aa18.44■□□□□ 0.54
TPM4-201ENST00000300933 RIMS4Q9H426 269 aaPredicted RBP18.44■□□□□ 0.54
TPM4-201ENST00000300933 TSTD3H0UI37 97 aa18.44■□□□□ 0.54
TPM4-201ENST00000300933 CST7O76096 145 aa18.44■□□□□ 0.54
TPM4-201ENST00000300933 LRFN3Q9BTN0 628 aa18.44■□□□□ 0.54
TPM4-201ENST00000300933 KCNS2Q9ULS6 477 aa18.44■□□□□ 0.54
TPM4-201ENST00000300933 A0A0G2JRQ6 117 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 M0R1B8 84 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 SLC31A2O15432 143 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 SSSCA1O60232 199 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 SCAF4O95104 1147 aaKnown RBP18.43■□□□□ 0.54
TPM4-201ENST00000300933 PSG2P11465 335 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 PKIAP61925 76 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 SPRNQ5BIV9 151 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 Q6ZS92 163 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 H1FOOQ8IZA3 346 aaPredicted RBP18.43■□□□□ 0.54
TPM4-201ENST00000300933 OR4D5Q8NGN0 318 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 SH3BGRL2Q9UJC5 107 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 CNOT4O95628 575 aaKnown RBP18.43■□□□□ 0.54
TPM4-201ENST00000300933 PTBP3O95758 552 aaKnown RBP18.43■□□□□ 0.54
TPM4-201ENST00000300933 GCH1P30793 250 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 TESK1Q15569 626 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 ZNF124Q15973 351 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 SRSF7Q16629 238 aaKnown RBP eCLIP18.43■□□□□ 0.54
TPM4-201ENST00000300933 ZNF880Q6PDB4 577 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 OR2Z1Q8NG97 314 aa18.43■□□□□ 0.54
TPM4-201ENST00000300933 PACRGQ96M98 296 aaPredicted RBP18.43■□□□□ 0.54
TPM4-201ENST00000300933 A0A087WWC5 75 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 J3QW42 95 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 CDS2O95674 445 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 CTXN2P0C2S0 81 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 CEACAM6P40199 344 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 NBL1P41271 181 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 GLIPR1P48060 266 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 NUBP1P53384 320 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 ZNF146Q15072 292 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 SNX22Q96L94 193 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 SMDT1Q9H4I9 107 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 KIAA1456Q9P272 454 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 IGF2RP11717 2491 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 RPL23AP62750 156 aaKnown RBP18.42■□□□□ 0.54
TPM4-201ENST00000300933 ZNF266Q14584 549 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 OR5C1Q8NGR4 320 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 OR1L1Q8NH94 360 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 MISP3Q96FF7 219 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 FAM210BQ96KR6 192 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 TMEM56Q96MV1 263 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 SSX3Q99909 188 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 TMEM56-RWDD3S4R434 201 aa18.42■□□□□ 0.54
TPM4-201ENST00000300933 MBD3L4A6NDZ8 208 aaPredicted RBP18.41■□□□□ 0.54
TPM4-201ENST00000300933 MBD3L3A6NE82 208 aaPredicted RBP18.41■□□□□ 0.54
TPM4-201ENST00000300933 MBD3L5A6NJ08 208 aaPredicted RBP18.41■□□□□ 0.54
TPM4-201ENST00000300933 IGLV2-14P01704 120 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 ZNF718Q3SXZ3 478 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 AKR1C8PQ5T2L2 129 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 IGFL3Q6UXB1 125 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 WDR82Q6UXN9 313 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 MBD3L2Q8NHZ7 208 aaPredicted RBP18.41■□□□□ 0.54
TPM4-201ENST00000300933 PLPPR2Q96GM1 343 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 TAAR3PQ9P1P4 343 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 SLC25A15Q9Y619 301 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 F2RP25116 425 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 NKX2-1P43699 371 aaPredicted RBP18.41■□□□□ 0.54
TPM4-201ENST00000300933 Q8IYB0 196 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 FAM185AQ8N0U4 392 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 OR10V1Q8NGI7 309 aa18.41■□□□□ 0.54
TPM4-201ENST00000300933 PKDREJQ9NTG1 2253 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 PHOX2AO14813 284 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 IGLV1-44P01699 117 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 BMP5P22003 454 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 OR3A1P47881 315 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 TAS2R60P59551 318 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 SSX2Q16385 188 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 C1orf162Q8NEQ5 155 aaPredicted RBP18.4■□□□□ 0.54
TPM4-201ENST00000300933 RFESDQ8TAC1 157 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 DCTN5Q9BTE1 182 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 ELOA3CA0A087WX78 387 aaPredicted RBP18.4■□□□□ 0.54
TPM4-201ENST00000300933 TRBV6-6A0A0A6YYG2 114 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 TMEM50AO95807 157 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 FAM27E3Q08E93 113 aa18.4■□□□□ 0.54
TPM4-201ENST00000300933 USF2Q15853 346 aaPredicted RBP18.4■□□□□ 0.54
TPM4-201ENST00000300933 H3BP45 60 aa18.39■□□□□ 0.54
TPM4-201ENST00000300933 UCP1P25874 307 aa18.39■□□□□ 0.54
TPM4-201ENST00000300933 IL2RGP31785 369 aa18.39■□□□□ 0.54
TPM4-201ENST00000300933 FOXC1Q12948 553 aa18.39■□□□□ 0.54
TPM4-201ENST00000300933 BEND4Q6ZU67 534 aa18.39■□□□□ 0.54
TPM4-201ENST00000300933 STX12Q86Y82 276 aa18.39■□□□□ 0.54
TPM4-201ENST00000300933 ABHD17AQ96GS6 310 aa18.39■□□□□ 0.54
TPM4-201ENST00000300933 CXXC4Q9H2H0 198 aa18.39■□□□□ 0.54
TPM4-201ENST00000300933 P2RY6Q15077 328 aa18.39■□□□□ 0.53
TPM4-201ENST00000300933 LTC4SQ16873 150 aa18.39■□□□□ 0.53
TPM4-201ENST00000300933 OR52L2PQ8NGH6 319 aa18.39■□□□□ 0.53
TPM4-201ENST00000300933 RNASE11Q8TAA1 199 aaKnown RBP18.39■□□□□ 0.53
TPM4-201ENST00000300933 MRGPRDQ8TDS7 321 aa18.39■□□□□ 0.53
TPM4-201ENST00000300933 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.38■□□□□ 0.53
TPM4-201ENST00000300933 SERPINE2P07093 398 aa18.38■□□□□ 0.53
TPM4-201ENST00000300933 GABRA2P47869 451 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms