RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 OR2B11Q5JQS5 317 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 ZNF788Q6ZQV5 615 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 TGIF2LXQ8IUE1 241 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 SELENOHQ8IZQ5 122 aaKnown RBP11.86□□□□□ -0.51
C9orf3-202ENST00000297979 CNTNAP3BQ96NU0 1288 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 CNTNAP3Q9BZ76 1288 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 UNKLQ9H9P5 680 aaKnown RBP11.86□□□□□ -0.51
C9orf3-202ENST00000297979 BCL2L11O43521 198 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 EIF3GO75821 320 aaKnown RBP eCLIP11.86□□□□□ -0.51
C9orf3-202ENST00000297979 PPP1CCP36873 323 aaKnown RBP11.86□□□□□ -0.51
C9orf3-202ENST00000297979 DRAM1Q8N682 238 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 RFESDQ8TAC1 157 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 RBPMSQ93062 196 aaKnown RBP11.86□□□□□ -0.51
C9orf3-202ENST00000297979 IL22RA2Q969J5 263 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 C14orf79Q96F83 325 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 CCL13Q99616 98 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 FAM234AQ9H0X4 552 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 OR6C3Q9NZP0 311 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 ADGRG4Q8IZF6 3080 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 A0A1B0GW55 424 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 NKX6-3A6NJ46 265 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 DEFB108AA8MXU0 73 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 LGALS8O00214 317 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 DUX4L2P0CJ85 424 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 DUX4L3P0CJ86 424 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 DUX4L4P0CJ87 422 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 DUX4L5P0CJ88 424 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 DUX4L6P0CJ89 424 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 DUX4L7P0CJ90 424 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 FAM53AQ6NSI3 398 aaPredicted RBP11.85□□□□□ -0.51
C9orf3-202ENST00000297979 DUX4L9Q6RFH8 374 aaPredicted RBP11.85□□□□□ -0.51
C9orf3-202ENST00000297979 FOXRED2Q8IWF2 684 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 ZNF645Q8N7E2 425 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 OR1S1Q8NH92 325 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 C14orf144Q96I85 54 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 DUX4Q9UBX2 424 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 COL6A6A6NMZ7 2263 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 TRAV38-1A0A0B4J264 116 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 TMEM178BH3BS89 294 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 KCNAB3O43448 404 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 ZNF672Q499Z4 452 aaPredicted RBP11.85□□□□□ -0.51
C9orf3-202ENST00000297979 C4orf17Q53FE4 359 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 FAM216BQ8N7L0 139 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 RRNAD1Q96FB5 475 aaKnown RBP11.85□□□□□ -0.51
C9orf3-202ENST00000297979 ATP6V0BQ99437 205 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 OR2D2Q9H210 308 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 ITPR1Q14643 2758 aa11.85□□□□□ -0.51
C9orf3-202ENST00000297979 IGHV3-43A0A0B4J1X8 118 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 PIGBOS1A0A0B4J2F0 54 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 TMEM238C9JI98 176 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 SIGLEC5O15389 551 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 IGHV3-43DP0DP04 118 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 LOXP28300 417 aaPredicted RBP11.84□□□□□ -0.51
C9orf3-202ENST00000297979 HFEQ30201 348 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 S100A7AQ86SG5 101 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 ZBTB34Q8NCN2 500 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 OR52M1Q8NGK5 317 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 SPIN2AQ99865 258 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 SPIN2BQ9BPZ2 258 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 TMEM106BQ9NUM4 274 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 LIN7CQ9NUP9 197 aaKnown RBP11.84□□□□□ -0.51
C9orf3-202ENST00000297979 DEDDO75618 318 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 RLN2P04090 185 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 SERPINE2P07093 398 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 UQCRFS1P47985 274 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 MUC15Q8N387 334 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 CLRN3Q8NCR9 226 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 CCL17Q92583 94 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 TMEM204Q9BSN7 226 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 SDHAF2Q9NX18 166 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 JPT1Q9UK76 154 aa11.84□□□□□ -0.51
C9orf3-202ENST00000297979 LSM5Q9Y4Y9 91 aaKnown RBP11.84□□□□□ -0.51
C9orf3-202ENST00000297979 PPIAL4EA0A075B759 164 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 RNF212BA8MTL3 300 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 PPIAL4DF5H284 164 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 MBPP02686 304 aaPredicted RBP11.83□□□□□ -0.52
C9orf3-202ENST00000297979 RD3LP0DJH9 198 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 PPIAL4FP0DN26 164 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 VDAC1P21796 283 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 MSMO1Q15800 293 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 LTC4SQ16873 150 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 LHFPL4Q7Z7J7 247 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 AQP10Q96PS8 301 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 RNF150Q9ULK6 438 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 PPIAL4AQ9Y536 164 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 HCFC1P51610 2035 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 TANC2Q9HCD6 1990 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 BTBD17A6NE02 478 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 GNLYP22749 145 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 UBA52P62987 128 aaKnown RBP11.83□□□□□ -0.52
C9orf3-202ENST00000297979 SLAQ13239 276 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 NMSQ5H8A3 153 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 ZNF808Q8N4W9 903 aaPredicted RBP11.83□□□□□ -0.52
C9orf3-202ENST00000297979 OR4D5Q8NGN0 318 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 PLEKHF2Q9H8W4 249 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 RAB9BQ9NP90 201 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 CALYQ9NYX4 217 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 GNG12Q9UBI6 72 aa11.83□□□□□ -0.52
C9orf3-202ENST00000297979 PUS1Q9Y606 427 aaKnown RBP eCLIP11.83□□□□□ -0.52
C9orf3-202ENST00000297979 DIDO1Q9BTC0 2240 aaKnown RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms