RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 IGKV1-39P01597 117 aa18.74■□□□□ 0.59
SMARCB1-201ENST00000263121 IGKV1D-39P04432 117 aa18.74■□□□□ 0.59
SMARCB1-201ENST00000263121 DUTP33316 252 aaKnown RBP18.74■□□□□ 0.59
SMARCB1-201ENST00000263121 C1orf229Q6ZS94 237 aaPredicted RBP18.74■□□□□ 0.59
SMARCB1-201ENST00000263121 C9orf62Q8N4C0 152 aa18.74■□□□□ 0.59
SMARCB1-201ENST00000263121 TCTEX1D2Q8WW35 142 aa18.74■□□□□ 0.59
SMARCB1-201ENST00000263121 NRGNQ92686 78 aa18.74■□□□□ 0.59
SMARCB1-201ENST00000263121 ZNF251Q9BRH9 671 aa18.74■□□□□ 0.59
SMARCB1-201ENST00000263121 SESN1Q9Y6P5 492 aa18.74■□□□□ 0.59
SMARCB1-201ENST00000263121 SAA2-SAA4A0A096LPE2 208 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 LIPFP07098 398 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 SAA2P0DJI9 122 aaPredicted RBP18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 ATP5J2P56134 94 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 BRWD1-AS2P59051 145 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 LOC105371242A0A075B767 164 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 KIAA1324LA8MWY0 1029 aaPredicted RBP18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 M0R1X1 148 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 VDAC1P21796 283 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 LRRC37A5PQ49AS3 106 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 NMSQ5H8A3 153 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 LYG1Q8N1E2 194 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 LINC00311Q8N616 119 aa18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 ZBTB8BQ8NAP8 495 aaPredicted RBP18.73■□□□□ 0.59
SMARCB1-201ENST00000263121 MPC2O95563 127 aa18.72■□□□□ 0.59
SMARCB1-201ENST00000263121 RPA2P15927 270 aa18.72■□□□□ 0.59
SMARCB1-201ENST00000263121 PSMB6P28072 239 aa18.72■□□□□ 0.59
SMARCB1-201ENST00000263121 LINC00205P59089 165 aa18.72■□□□□ 0.59
SMARCB1-201ENST00000263121 DRAXINQ8NBI3 349 aaPredicted RBP18.72■□□□□ 0.59
SMARCB1-201ENST00000263121 CLDND2Q8NHS1 167 aa18.72■□□□□ 0.59
SMARCB1-201ENST00000263121 TMEM133Q9H2Q1 129 aa18.72■□□□□ 0.59
SMARCB1-201ENST00000263121 GSKIPQ9P0R6 139 aa18.72■□□□□ 0.59
SMARCB1-201ENST00000263121 ZNRD1Q9P1U0 126 aa18.72■□□□□ 0.59
SMARCB1-201ENST00000263121 HMSDA8MTL9 139 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 NDUFS8O00217 210 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 RAMP3O60896 148 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 SLC25A4P12235 298 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 LMO4P61968 165 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 NCR3LG1Q68D85 454 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 ZNF787Q6DD87 383 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 C11orf87Q6NUJ2 197 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 SPAG16Q8N0X2 631 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 C10orf105Q8TEF2 133 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 FAM168AQ92567 244 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 PLSCR3Q9NRY6 295 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 BOLA1Q9Y3E2 137 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 AKAP6Q13023 2319 aa18.71■□□□□ 0.59
SMARCB1-201ENST00000263121 J3QR06 171 aa18.7■□□□□ 0.58
SMARCB1-201ENST00000263121 LPAR6P43657 344 aa18.7■□□□□ 0.58
SMARCB1-201ENST00000263121 OR2B11Q5JQS5 317 aa18.7■□□□□ 0.58
SMARCB1-201ENST00000263121 OR9G1Q8NH87 305 aa18.7■□□□□ 0.58
SMARCB1-201ENST00000263121 PIMREGQ9BSJ6 248 aa18.7■□□□□ 0.58
SMARCB1-201ENST00000263121 GSX2Q9BZM3 304 aa18.7■□□□□ 0.58
SMARCB1-201ENST00000263121 FXYD6-FXYD2A0A087WZ82 144 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 A8MXK9 166 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 VWC2LB2RUY7 222 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 LGALSLQ3ZCW2 172 aaPredicted RBP18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 DDB2Q92466 427 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 LSM10Q969L4 123 aaKnown RBP18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 HSPB11Q9Y547 144 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 ZFP36P26651 326 aaKnown RBP18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 SSTR2P30874 369 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 RAB32Q13637 225 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 TMEM65Q6PI78 240 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 CLEC2AQ6UVW9 174 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 ZNF833PQ6ZTB9 187 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 ABHD12Q8N2K0 398 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 CD300LFQ8TDQ1 290 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 PSMG3-AS1Q96PY0 264 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 S1PR3Q99500 378 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 SPIN2AQ99865 258 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 SPIN2BQ9BPZ2 258 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 ONECUT1Q9UBC0 465 aa18.69■□□□□ 0.58
SMARCB1-201ENST00000263121 A0A0G2JRQ6 117 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 hCG_1809904A0A1W2PP81 198 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 A0A1W2PPE2 198 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 A0A1W2PR64 198 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 A0A1W2PRV1 198 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 H0YIZ8 118 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 M0R1W7 72 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 IGKV1-5P01602 117 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 Q8N7P7 452 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 OR4D5Q8NGN0 318 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 THAP6Q8TBB0 222 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 PERPQ96FX8 193 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 RNF126Q9BV68 326 aa18.68■□□□□ 0.58
SMARCB1-201ENST00000263121 RBFOX2O43251 390 aaKnown RBP eCLIP18.67■□□□□ 0.582e-7■■■■■ 33.6
SMARCB1-201ENST00000263121 S1PR2O95136 353 aa18.67■□□□□ 0.58
SMARCB1-201ENST00000263121 LYL1P12980 280 aa18.67■□□□□ 0.58
SMARCB1-201ENST00000263121 THBS3P49746 956 aa18.67■□□□□ 0.58
SMARCB1-201ENST00000263121 ZNF816Q0VGE8 651 aaPredicted RBP18.67■□□□□ 0.58
SMARCB1-201ENST00000263121 TNFRSF14Q92956 283 aa18.67■□□□□ 0.58
SMARCB1-201ENST00000263121 GPR146Q96CH1 333 aa18.67■□□□□ 0.58
SMARCB1-201ENST00000263121 ADTRPQ96IZ2 230 aa18.67■□□□□ 0.58
SMARCB1-201ENST00000263121 MBD2Q9UBB5 411 aa18.67■□□□□ 0.58
SMARCB1-201ENST00000263121 TENM4Q6N022 2769 aa18.67■□□□□ 0.58
SMARCB1-201ENST00000263121 IGHV2-26A0A0B4J1V2 119 aa18.66■□□□□ 0.58
SMARCB1-201ENST00000263121 ARPC5O15511 151 aa18.66■□□□□ 0.58
SMARCB1-201ENST00000263121 SLC25A6P12236 298 aa18.66■□□□□ 0.58
SMARCB1-201ENST00000263121 CXCL2P19875 107 aa18.66■□□□□ 0.58
SMARCB1-201ENST00000263121 KIR2DS2P43631 304 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms